LOC120567002


Basic Information

Item Value
gene id LOC120567002
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 15205133 ~ 15436933 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640503.1
GCCAGAGCACTTTTAAACTAACTCACCTAAATGGAACGCAGCCATAATTAAGGGTAACAATcccacctgtgcttttcccaATGGCTTTTCCTGCTTGAACAAGTCAAGCCATGAAAATTGTCTACTAATGAGAGTAGTGAAGCCGCCAAAAtcgagttagctagctaactgacaTAGAAATATACTTTTACATGTTTTGTTCGTGACCGAAAACGTTTCAACTAGCACTGTAGCACCCGGGAAAACGGACGCGTGGCGAGTGAGGAAAAttagcagtttaaaaaacagccTGAACTGCTAGCATACGTTAATTCAGTTTCAGTCGAGCTAGCTAATGCCTcggcagctagctagcgttgGTCGGcttgtctcccccccccccttgtttCTGCTGCTCCGTGGGAAGCATTGTACTAACAATACAAACCAAGTTAGTGACAAATATTTAGTTAGTCCGTTTGCACTGAAGTGTAGCTATGTGCATAGCGTAAGGATGGATAACTAGCTGAAATAACCGTCAGCTAGCTAGTGTTGTGGCAGAAATGCTGCTGCTAGTGTTTTCACTGGACACGTTCAGTTCCTTCTATGACATTCATTGTGTTTGACAACTCGTAAAAACATGTTCCCTGAACATCCGCAAGCCATGCTTTACACACCGAAGGACCAGTTGGGTGCATAACGGGAGTCCAGCTGACCTTTTGAGAGAAGCATTACCTGCAAATGATTTAACGGTCAATGACAGCTGGAGGGATGTAATCCTGAGATGGTTCAACGCCTACACTCGCTCTCCTCAGCGGTCGCAATGAGTTGCTGTTGTATTTCTCTTCTCTCCCGCCACAAAAGGTGGCACAACTTGGACTGGAACAGATCCAGACTTGCAGctCTACAGAACAAAGTCCTAAATGAGAATTTCCCCACACTTGTTACCAGGACAACCTGCTCCTTCAGTGCACCCTTAAAGTAAATAGATGGGAAGACGGTCGGAAAGGAGGAAGGGATCTAGTCTTTGAGATCTCCTGGGGAGCCTCGGAGAGACGGAGGGAACAGATGTTCAGGAGGAGCCCTTCTATTCTCGGCCTGTttctggagATCTGACTGACCACTGATAAGGTGTACTTGGACACACCAGACTCTCCTCACAGTATGAGAAACCATCAAGAGGAAGTTATTGCTCATTGTCACACTTCTCAACTGCTCAGTAAGTATAAATATCAACAGCTGCTGT
>XR_005640504.1
GCCAGAGCACTTTTAAACTAACTCACCTAAATGGAACGCAGCCATAATTAAGGGTAACAATcccacctgtgcttttcccaATGGCTTTTCCTGCTTGAACAAGTCAAGCCATGAAAATTGTCTACTAATGAGAGTAGTGAAGCCGCCAAAAtcgagttagctagctaactgacaTAGAAATATACTTTTACATGTTTTGTTCGTGACCGAAAACGTTTCAACTAGCACTGTAGCACCCGGGAAAACGGACGCGTGGCGAGTGAGGAAAAttagcagtttaaaaaacagccTGAACTGCTAGCATACGTTAATTCAGTTTCAGTCGAGCTAGCTAATGCCTcggcagctagctagcgttgGTCGGcttgtctcccccccccccttgtttCTGCTGCTCCGTGGGAAGCATTGTACTAACAATACAAACCAAGTTAGTGACAAATATTTAGTTAGTCCGTTTGCACTGAAGTGTAGCTATGTGCATAGCGTAAGGATGGATAACTAGCTGAAATAACCGTCAGCTAGCTAGTGTTGTGGCAGAAATGCTGCTGCTAGTGTTTTCACTGGACACGTTCAGTTCCTTCTATGACATTCATTGTGTTTGACAACTCGTAAAAACATGTTCCCTGAACATCCGCAAGCCATGCTTTACACACCGAAGGACCAGTTGGGTGCATAACGGGAGTCCAGCTGACCTTTTGAGAGAAGCATTACCTGCAAATGATTTAACGGTCAATGACAGCTGGAGGGATGTAATCCTGAGATGGTTCAACGCCTACACTCGCTCTCCTCAGCGGTCGCAATGGTGGCACAACTTGGACTGGAACAGATCCAGACTTGCAGctCTACAGAACAAAGTCCTAAATGAGAATTTCCCCACACTTGTTACCAGGACAACCTGCTCCTTCAGTGCACCCTTAAAGTAAATAGATGGGAAGACGGTCGGAAAGGAGGAAGGGATCTAGTCTTTGAGATCTCCTGGGGAGCCTCGGAGAGACGGAGGGAACAGATGTTCAGGAGGAGCCCTTCTATTCTCGGCCTGTttctggagATCTGACTGACCACTGATAAGGTGTACTTGGACACACCAGACTCTCCTCACAGTATGAGAAACCATCAAGAGGAAGTTATTGCTCATTGTCACACTTCTCAACTGCTCAGTAAGTATAAATATCAACAGCTGCTGT

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640503.1 True 1225 lncRNA 0.46 6 15205133 15436933
XR_005640504.1 False 1187 lncRNA 0.46 5 15205133 15436933

Neighbor

gene id symbol gene type direction distance location
sncb sncb coding downstream 55204 15135126 ~ 15149929 (-)
LOC120567479 NA coding downstream 72979 15127898 ~ 15132154 (-)
nek12 NA coding downstream 151883 15050136 ~ 15053250 (-)
drd1a drd1,LOC103470866,LOC103144507,LOC106953475 coding downstream 172865 15028908 ~ 15032268 (-)
nkx2.5 nkx2-5 coding downstream 303843 14898308 ~ 14901290 (-)
ctnna1 ctnna1 coding upstream 4486 15441419 ~ 15516760 (-)
LOC120566876 LOC104959829 coding upstream 184081 15621014 ~ 15638360 (-)
dctn4 dctn4 coding upstream 234702 15671635 ~ 15688818 (-)
tnip1 tnip1,LOC103376067 coding upstream 261404 15698337 ~ 15715960 (-)
anxa6 anxa6,LOC102795126 coding upstream 280308 15717241 ~ 15729319 (-)
G105049 NA non-coding downstream 176267 15028350 ~ 15028866 (-)
G105040 NA non-coding downstream 179724 15025016 ~ 15025409 (-)
LOC120567075 NA non-coding downstream 252078 14948393 ~ 14953055 (-)
G105001 NA non-coding downstream 313622 14890593 ~ 14891511 (-)
G104999 NA non-coding downstream 316926 14883859 ~ 14888207 (-)
G105147 NA non-coding upstream 90133 15527066 ~ 15529259 (-)
G105149 NA non-coding upstream 132885 15569818 ~ 15570080 (-)
G105217 LOC103376071,LOC104959352 non-coding upstream 314521 15751454 ~ 15755017 (-)
G105230 NA non-coding upstream 391358 15828291 ~ 15828491 (-)
G105241 NA non-coding upstream 443430 15880363 ~ 15889068 (-)
G105086 NA other downstream 70397 15133530 ~ 15134736 (-)
rnf44 rnf44 other downstream 96535 15089404 ~ 15108598 (-)
LOC120567441 LOC100697283,LOC102197909,LOC102314576 other downstream 465640 14735192 ~ 14739493 (-)
uvssa uvssa,LOC104961899,LOC106533076 other downstream 631640 14537100 ~ 14573493 (-)
G104837 NA other downstream 949092 14150492 ~ 14256041 (-)
tspan17 tspan17,LOC103361971 other upstream 161410 15598343 ~ 15619108 (-)
hnrnph1 hnrnph1,LOC102791917 other upstream 429127 15866060 ~ 15871949 (-)
unc5a unc5a,LOC102788949 other upstream 523264 15960197 ~ 16103794 (-)
gria3b LOC107394330,LOC106515969,LOC108242060,LOC101171999,LOC103357241,LOC104923180,LOC100695922,LOC102783061,LOC105925698,LOC107093457 other upstream 1087423 16524356 ~ 16674855 (-)
rab9b rab9b,LOC103391151,LOC102204615,LOC100697336,LOC108436189,LOC103026314,LOC105912179 other upstream 1520710 16957643 ~ 16963536 (-)

Expression


Co-expression Network