LOC120567160


Basic Information

Item Value
gene id LOC120567160
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 22723025 ~ 22725653 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640528.1
AGCACTGAGGGATCATCATGGACATCAGGCCCAGAGCCATGAAGGACACCACCTGAAACAGACACATTCAGTGTCTctattatttctgtttctaaTGGACATGGCTGCCTGTTTCATAGGCCACAGCTGCAAACTTCGGAACAGCAGAACAGGAAGACCAAACGCATATAAGTCAGACCCTCCCACTCCCCTCAGTCCGGACCCCCAAATCAGATCCAAAACATTTAACCGCCCTCTGAAGTCTTTTCTGAACTTGTGAAATATTTGCTCTGCTTTGAAGGGCTCTACATTCATAATGACCATAGGATAGGCATGTTTAGGGATACAGAGAGGCCATACAGGAGAGGTTTCCTGAGGTGGTCGAGCCAATACAAAGACCGGGGCTGTGTTTACATCTGGCCCCGGGCCTGAAACAACAGGCCTGACAGAGGGAGGCCGGAGCTGGAACATCCGACATCTGGATAGAGGGAGATCAACTTCACAGCTCCACGCTGCAGCTTTACACATCATCCTCATCCTTCACTATCTCACCATTTCACACCAAAGTCGACCATatgtcaacatttttttaaaataccaTGAATTTTGGATTCCAATTATCATGAAAAGCAAAGTTACTGTGCTTTAAAATcacattttcccttttttacgGTAAAAAATAAACAGTGTTATTTTACCTAGCCTGCAAACTGGCATTAGAGGTGCACTTTTCGCCAGAATGTTTGTTTGGTCGCTCGTTTAACAAGCTTAGGTGCCTGTCAATCATAATTCACATAAATCacaatattttgaaaaaaagtcagataatCGTGTGTCTGACACACTGATtaactgactttttttcaaaatattgtacccttttaacttaacataacccAATTCAGGGTAGGAGCAAATACACGTGTGTACTTATAATTTGA

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640528.1 True 920 lncRNA 0.43 2 22723025 22725653

Neighbor

gene id symbol gene type direction distance location
f8 LOC104960537 coding upstream 18004 22685286 ~ 22705021 (+)
zgc:152774 NA coding upstream 38853 22664890 ~ 22684172 (+)
pmt LOC106930518,LOC102210468 coding upstream 62775 22650018 ~ 22660250 (+)
mid2 mid2,LOC101473971,LOC102306025 coding upstream 119754 22435278 ~ 22603271 (+)
klhl4 klhl4,LOC103356419,LOC102308013 coding upstream 923030 21771722 ~ 21799995 (+)
LOC120567158 NA coding downstream 17954 22743607 ~ 22753993 (+)
si:dkey-34l15.1 LOC104919989,LOC104960541 coding downstream 28988 22754641 ~ 22762526 (+)
zgc:195212 NA coding downstream 36832 22762485 ~ 22770301 (+)
pola2 pola2 coding downstream 44917 22770570 ~ 22778164 (+)
zdhhc24 zdhhc24 coding downstream 58957 22784610 ~ 22788719 (+)
G107073 NA non-coding upstream 91655 22631079 ~ 22631370 (+)
G107050 NA non-coding upstream 307690 22415002 ~ 22415335 (+)
LOC120566464 NA non-coding upstream 325974 22390353 ~ 22397051 (+)
G107025 LOC104954424,LOC103390732 non-coding upstream 344685 22331012 ~ 22378340 (+)
G106992 NA non-coding upstream 879075 21843662 ~ 21843950 (+)
G107149 NA non-coding downstream 97948 22823601 ~ 22823862 (+)
G107161 NA non-coding downstream 131002 22856655 ~ 22856868 (+)
G107164 NA non-coding downstream 140315 22865968 ~ 22866201 (+)
LOC120566955 NA non-coding downstream 141426 22867079 ~ 22875098 (+)
G107170 LOC103356238,LOC104934092,LOC105928696,LOC104942686,LOC106516021 non-coding downstream 158424 22884077 ~ 22887891 (+)
stx3a stx3,stx2,LOC103390944,LOC106516362,LOC103147491,LOC107376692 other upstream 1254198 21448800 ~ 21468827 (+)
zdhhc5b zdhhc5 other upstream 1372047 21289531 ~ 21350978 (+)
selenoh selenoh other upstream 1439796 21279687 ~ 21283229 (+)
hrh2a LOC103354784,LOC104948895 other upstream 1775610 20934729 ~ 20947415 (+)
G106465 LOC104955902 other upstream 2370858 20351721 ~ 20352167 (+)
G107163 LOC103356264 other downstream 136537 22862190 ~ 22865676 (+)
ubxn1 ubxn1,LOC103374193 other downstream 178102 22903755 ~ 22909562 (+)
rom1b rom1,LOC102779683 other downstream 224942 22950595 ~ 22997038 (+)
G107168 NA other downstream 229319 22954972 ~ 22973761 (+)
flrt1b LOC103374305,LOC102200053 other downstream 374372 23100025 ~ 23132685 (+)

Expression


Co-expression Network