LOC120567444


Basic Information

Item Value
gene id LOC120567444
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 19973785 ~ 19998801 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005640569.1
GAGTGTGGTTGCCACGGCGAGGACGCCCTCTTTTAGTAAAGCCAACATACCAGCCTGTGTAGCGCGCTGACATCAGAGCTGTGTAGTGGTTTTCCAGAACCTTTTCCACAAAGACGCAGTCATCACTTCGATTACTGGCCTTCTGAGAGAGCAGATAAaccacaggtCCTCTTCACAAGCAGCGCTTACTTTAAGTGGGACAGACAGCTCGAAGACTTAAGAGTTCAGTGTTCGAGTCTGAAACCAcagGCTATGGGGTCACCGGCAGGTCCTCATCTCCTCAGACCAGACCAGACGATGAGGAGGGGAAGCGGCTTGGTGCGGTGCAGAGCGCAGCGGTGTGCTGTGTAGCAGTCTCCAATCTGGGACATGGCCTTGGGCTGCgactaaatgaaaaatgaaacagCAGCAGTGGGGCCTTAAATGTTTGTAAATCGGAGACTGGCTAAACCGtgctaaacacaaaaacacacacacacacacagagcagactCCAAACAGATCTCCCACAGAACAGCACCCTCTGACCTGCTTTCCTGGCCTGGTTCTGGCCCGAATCCAAACCTAGTCAGGTACACACCAAAGGCGATTTCTCCGCCAGTGGCCTGCCTTGGgtttattttccttttaaagGCTGCTTTGTTTTCATGATTAATCAGAGTGAAGGGTTCTCAAGCAGGATTCATGACCgcaattgaatgcatttttaacttcaataa
>XR_005640570.1
GAGTGTGGTTGCCACGGCGAGGACGCCCTCTTTTAGTAAAGCCAACATACCAGCCTGTGTAGCGCGCTGACATCAGAGCTGTGTAGTGGTTTTCCAGAACCTTTTCCACAAAGACGCAGTCATCACTTCGATTACTGGCCTTCTGAGAGAGCAGATAAaccacagATGGTTGTCAGATAAGCCTGGTCACACACATGGATGTAAGGCCGCTGACCACAAATGGGCCTCGTAAAAAAAGATAACAGCCAAGAGTAGACAGAGCACGGTGGGCTGAGAGCAGCGGGAGAACACTCAGACTGAGTGTCTGCGATACTGTTGTTTAAAGgtCCTCTTCACAAGCAGCGCTTACTTTAAGTGGGACAGACAGCTCGAAGACTTAAGAGTTCAGTGTTCGAGTCTGAAACCAcagGCTATGGGGTCACCGGCAGGTCCTCATCTCCTCAGACCAGACCAGACGATGAGGAGGGGAAGCGGCTTGGTGCGGTGCAGAGCGCAGCGGTGTGCTGTGTAGCAGTCTCCAATCTGGGACATGGCCTTGGGCTGCgactaaatgaaaaatgaaacagCAGCAGTGGGGCCTTAAATGTTTGTAAATCGGAGACTGGCTAAACCGtgctaaacacaaaaacacacacacacacacagagcagactCCAAACAGATCTCCCACAGAACAGCACCCTCTGACCTGCTTTCCTGGCCTGGTTCTGGCCCGAATCCAAACCTAGTCAGGTACACACCAAAGGCGATTTCTCCGCCAGTGGCCTGCCTTGGgtttattttccttttaaagGCTGCTTTGTTTTCATGATTAATCAGAGTGAAGGGTTCTCAAGCAGGATTCATGACCgcaattgaatgcatttttaacttcaataa

Function

GO: NA

KEGG:

id description
ko00140 Steroid hormone biosynthesis
ko04913 Ovarian steroidogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005640569.1 False 719 lncRNA 0.50 3 19973785 19998801
XR_005640570.1 True 879 lncRNA 0.50 4 19973785 19998801

Neighbor

gene id symbol gene type direction distance location
fbxw11a fbxw11 coding upstream 10537 19942409 ~ 19963248 (+)
etf1a etf1,LOC108430956 coding upstream 32940 19932847 ~ 19940845 (+)
bicc2 LOC104951703,LOC100700004,LOC102206312,LOC101472209,LOC102314010 coding upstream 378286 19584399 ~ 19595499 (+)
LOC120566456 NA coding upstream 445509 19507295 ~ 19528276 (+)
LOC120566454 chrna9,LOC103365636,LOC102230700 coding upstream 469444 19498950 ~ 19504341 (+)
si:ch73-233f7.1 LOC103359310,LOC104951883,LOC102312450 coding downstream 16407 20015208 ~ 20022263 (+)
LOC120566322 NA coding downstream 35592 20034393 ~ 20040380 (+)
LOC120566529 LOC103375284,LOC102199591,LOC108242356,LOC106933149,LOC106516975 coding downstream 66185 20064986 ~ 20067565 (+)
LOC120567232 LOC103375287 coding downstream 69662 20068463 ~ 20071057 (+)
LOC120566530 LOC103375287 coding downstream 73554 20072355 ~ 20074975 (+)
LOC120566743 NA non-coding upstream 18822 19950757 ~ 19954963 (+)
G106351 NA non-coding upstream 32070 19940938 ~ 19941715 (+)
LOC120566488 NA non-coding upstream 125507 19844839 ~ 19848278 (+)
G106218 NA non-coding upstream 371692 19515958 ~ 19602093 (+)
G106199 NA non-coding upstream 557010 19416347 ~ 19416775 (+)
LOC120567249 NA non-coding downstream 275032 20273833 ~ 20275911 (+)
G106577 NA non-coding downstream 711708 20710509 ~ 20731673 (+)
G106679 NA non-coding downstream 1101683 21100484 ~ 21100835 (+)
G106684 NA non-coding downstream 1108697 21107498 ~ 21108359 (+)
G106707 NA non-coding downstream 1194265 21193066 ~ 21194849 (+)
G106237 spock1 other upstream 321311 19604840 ~ 19652474 (+)
adra2db LOC102798575,LOC100708556,LOC101479598,LOC102300678 other upstream 1003839 18963934 ~ 18969946 (+)
gabra6a gabra6,LOC102779400,LOC100710435,LOC102294139 other upstream 2074054 17890170 ~ 17899731 (+)
G105677 NA other upstream 2288086 17682919 ~ 17685699 (+)
LOC120567259 LOC106925651,LOC106940816,LOC108240559,LOC106591805,LOC102211808,LOC100691901,LOC106613062 other upstream 2509563 17458247 ~ 17464222 (+)
LOC120566323 LOC102781894,LOC101481808 other downstream 30062 20028863 ~ 20061338 (+)
G106465 LOC104955902 other downstream 352920 20351721 ~ 20352167 (+)
hrh2a LOC103354784,LOC104948895 other downstream 935928 20934729 ~ 20947415 (+)
selenoh selenoh other downstream 1280886 21279687 ~ 21283229 (+)
zdhhc5b zdhhc5 other downstream 1290730 21289531 ~ 21350978 (+)

Expression


Co-expression Network