trnaf-gaa_66


Basic Information

Item Value
gene id trnaf-gaa_66
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053121.1
NCBI id CM020918.1
chromosome length 40300294
location 23373936 ~ 23374008 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_474
gccgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctggttcgatcccgggtttcggca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_474 True 73 tRNA 0.53 1 23373936 23374008

Neighbor

gene id symbol gene type direction distance location
zgc:153018 LOC104960669,LOC103374078,LOC100705753 coding downstream 5145 23364082 ~ 23368791 (-)
si:ch211-107m4.1 NA coding downstream 10573 23357417 ~ 23363363 (-)
dnajc4 dnajc4 coding downstream 22367 23346187 ~ 23351569 (-)
vegfba vegfb coding downstream 29738 23328250 ~ 23344198 (-)
stx5a stx5 coding downstream 50979 23315838 ~ 23322957 (-)
foxo4 foxo4 coding upstream 69544 23443552 ~ 23453056 (-)
cfl1 cfl1 coding upstream 119103 23493111 ~ 23500048 (-)
atl3 atl3 coding upstream 127333 23501341 ~ 23514176 (-)
si:ch211-145o7.3 LOC104968223,LOC103390737 coding upstream 140607 23514615 ~ 23520010 (-)
yif1a yif1a coding upstream 146118 23520126 ~ 23526960 (-)
G107324 atg2a,si:ch73-45o6.2,LOC107660800 non-coding downstream 110037 23242037 ~ 23263899 (-)
G107282 NA non-coding downstream 149480 23170148 ~ 23224456 (-)
G107290 LOC105026702,LOC106604372 non-coding downstream 192219 23179692 ~ 23181717 (-)
G107220 NA non-coding downstream 400176 22928854 ~ 22973760 (-)
G107215 NA non-coding downstream 497477 22875496 ~ 22876459 (-)
G107610 NA non-coding upstream 418046 23792054 ~ 23792502 (-)
G107667 NA non-coding upstream 825491 24199499 ~ 24259346 (-)
LOC120566461 NA non-coding upstream 914141 24288149 ~ 24381312 (-)
G107742 NA non-coding upstream 1057993 24432001 ~ 24454134 (-)
G107755 arhgef6 non-coding upstream 1074113 24448121 ~ 24450769 (-)
rnaseh2c rnaseh2c other downstream 186878 23184192 ~ 23187058 (-)
trpt1 trpt1,LOC102777684 other downstream 196910 23092565 ~ 23177026 (-)
G107284 LOC103374305,LOC102779018 other downstream 239151 23129709 ~ 23134785 (-)
G107235 rom1,LOC103366586,LOC102779683 other downstream 380707 22990987 ~ 22993229 (-)
G107117 NA other downstream 681105 22691160 ~ 22692831 (-)
rab41 rab41,rab6ba,LOC106515338,LOC106604734,LOC107696768 other upstream 510580 23884588 ~ 23988901 (-)
G107864 LOC103353306,LOC105925836,LOC106916384,LOC103140164 other upstream 1199433 24573441 ~ 24579099 (-)
trnav-uac_15 NA other upstream 1487962 24861970 ~ 24862184 (-)
ndufa1 NA other upstream 1889164 25263172 ~ 25264864 (-)
G107989 NA other upstream 1905595 25279603 ~ 25288086 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G290724 NA non-coding CI01000080 null 1036215 ~ 1036516 (+)
rainbow trout (Oncorhynchus mykiss) trnaf-gaa-394 NA coding NW_023493751.1 JAAXML020000463.1 204389 ~ 204461 (-)
striped catfish (Pangasianodon hypophthalmus) trnaf-gaa_28 NA coding NC_047610.1 CM018556.1 11267611 ~ 11267683 (+)
tiger barb (Puntius tetrazona) trnaf-gaa_120 NA coding NC_056721.1 CM032090.1 11515799 ~ 11515871 (+)
mexican tetra (Astyanax mexicanus) trnaf-gaa_28 NA coding NW_019171211.1 APWO02000809.1 3483 ~ 3555 (-)