LOC120568467 (afg3l2,LOC107688430)


Basic Information

Item Value
gene id LOC120568467
gene name afg3l2,LOC107688430
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 146242 ~ 175372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU148899
GCTAACGTCTGCAACGAGGCGGCTCTGATCGCCGCTCGCCACCTTTCAGACGCCATCAACCAGAAACACTTTGAACAGGCCATCGAGAGAGTCATCGGGgGTCTGGAGAAGAAGACCCAGGTGCTGCAGCCGGAGGAGAAGAAGACCGTGGCGTACCACGAGGCCGGCCACGCCGTCGCCGGCTGGTTCCTGGAGCACGCTGACCCGCTGCTGAAGGTCTC
>TU148917
TGTTCAGCGTCTCCGAGACGACGGCGAAGATCCTGAAGGACGAGATAGACGTGAAGTTCAAAGACGTGGCGGGCTGCGAGGAGGCCAAGATGGAGATCATGGAGTTCGTCAACTTCCTGAAGAACCCCAAACAGTACCAGGACCTGGGGGCCAAGATACCCAAGggagcTATCCTGACTGGTCCTCCAGGAACAGGAAAGACTCTTCTGGCCAAAGCGACGGCCGGCGAGGCCGACGTGCCGTTCATCACCGTCAACGGCTCAGAGTTCCTGGAGATGTTCGTAGGAGTCGGTCCTGCTaggGTGAGGGACCTGTTCGTCATGGCGAGGAAGAACGCTCCCTGCATCCTCTTCATCGACGAGATCGACGCCGTCGGACGCAAACGAGGACGAGGAAACTTCGGAGGGCAGAGCGAGCAGGAGAACACGCTGAACCAGCTGCTGGTGGAGATGGACGGGTTCAACACGGCCACCAACGTGGTCGTTCTGGCGGGAACCAACCGGCCGGACATCCTGGACCCGGCGCTGATGAGACCGGGACGCTTCGACAGGCAGATTTATATCGGTCCTCCGGACATCAAAGGCCGAGCGTCCATCTTTAAAGTCCACCTGCGTCCTCTGAAGCTGGAGACGGAGCTGGACAAAGACGCTCTGGCCAGGAAGATGGCCGCCCTCACACCTGGCTTCTCAGG
>TU148952
ccAGTCGAGTAAAGATGGCGGAGCTCTGTGATTACGGAACAGAGATGTTGCATTAGAGTCTAGTTTAGAGCCCGGTGGTGCTGCTGTGTTTCTGCCGGTGGGTGACAGGATGGCGCACCGCTACCTGCGGCTGTCAGCCGGCTGTAGGAACACTTTCCGGCGGCTGCTGCCCTCCAACGCTCCGGCCAGGCTGGTGTCGTGTACGACCATGGCGGAGGTGGTGAGGGGGCGGAGCCTGCTGAGTGACCTGCTGGGAGAGTACCGGAGGCTGAGCTCCAGACCACCcaaaggttttgagaaatattttcCAGAAGGTcagaaaaccccaaaaaacacGGAAGCTGAGGCAGCAACCAAAGAAGCCAAACCTGCCGATGCTCAGAAAGcttctggaggaggaggaggaggaggaggaggaggaggtggtgaaggaggaagaggaggtgaaggaggaagaggaggaaaacgAGGAGGGCGTAGGGAAGATTCCCACTGGTACACCCGTCTGCAGAAGGGAGATGTCCCCTGGGACGATAAGGAGTTCAGGATGTACCTGCTGAGCGGAGCAGCTTTCTGGACCACCGTCACATATTACCTCTTCTTCAGGGACGGAGGACGAGAAGTCACCTGGAAGGACTTCGTCAACAACTACCTGACCAGAGGAGTGGTGAGcacagg
>XM_039816024.1
agaagaagaagtccAGTCGAGTAAAGATGGCGGAGCTCTGTGATTACGGAACAGAGATGTTGCATTAGAGTCTAGTTTAGAGCCCGGTGGTGCTGCTGTGTTTCTGCCGGTGGGTGACAGGATGGCGCACCGCTACCTGCGGCTGTCAGCCGGCTGTAGGAACACTTTCCGGCGGCTGCTGCCCTCCAACGCTCCGGCCAGGCTGGTGTCGTGTACGACCATGGCGGAGGTGGTGAGGGGGCGGAGCCTGCTGAGTGACCTGCTGGGAGAGTACCGGAGGCTGAGCTCCAGACCACCcaaaggttttgagaaatattttcCAGAAGGTcagaaaaccccaaaaaacacGGAAGCTGAGGCAGCAACCAAAGAAGCCAAACCTGCCGATGCTCAGAAAGcttctggaggaggaggaggaggaggaggaggaggaggtggtgaaggaggaagaggaggtgaaggaggaagaggaggaaaacgAGGAGGGCGTAGGGAAGATTCCCACTGGTACACCCGTCTGCAGAAGGGAGATGTCCCCTGGGACGATAAGGAGTTCAGGATGTACCTGCTGAGCGGAGCAGCTTTCTGGACCACCGTCACATATTACCTCTTCTTCAGGGACGGAGGACGAGAAGTCACCTGGAAGGACTTCGTCAACAACTACCTGACCAGAGGAGTGTTGAGGAACGGCCCGGGCACAGCGAGGTCCGATCAACAGAGAGACAGCCGAGGCAGGAGGCCCGCCCGAGCGTACGACGCCAGCCCCAGGCACATGTGCCTGGTCGGACAGCCCGGTGTGTCGGGGGGAAAGAGAAGGCGGGGGGAGGCCAAGCGTGGCACAGATGGAGACGGCGGAAGGAATGCAAGCCAAAAAGTGAAGGAAACAGTGAGCCCCAGCCAgACGTTCCTACTGAGCATGCTCCCCACGGTGCTGATCATTGGCTTCCTGCTGGTGATGCTGCGTCGCGGGGGGGCGGGGCCTGGGGGGCGGCCCGGCCGCGGCATGGGGGGGCTGTTCAGCGTCTCCGAGACGACGGCGAAGATCCTGAAGGACGAGATAGACGTGAAGTTCAAAGACGTGGCGGGCTGCGAGGAGGCCAAGATGGAGATCATGGAGTTCGTCAACTTCCTGAAGAACCCCAAACAGTACCAGGACCTGGGGGCCAAGATACCCAAGggagcTATCCTGACTGGTCCTCCAGGAACAGGAAAGACTCTTCTGGCCAAAGCGACGGCCGGCGAGGCCGACGTGCCGTTCATCACCGTCAACGGCTCAGAGTTCCTGGAGATGTTCGTAGGAGTCGGTCCTGCTaggGTGAGGGACCTGTTCGTCATGGCGAGGAAGAACGCTCCCTGCATCCTCTTCATCGACGAGATCGACGCCGTCGGACGCAAACGAGGACGAGGAAACTTCGGAGGGCAGAGCGAGCAGGAGAACACGCTGAACCAGCTGCTGGTGGAGATGGACGGGTTCAACACGGCCACCAACGTGGTCGTTCTGGCGGGAACCAACCGGCCGGACATCCTGGACCCGGCGCTGATGAGACCGGGACGCTTCGACAGGCAGATTTATATCGGTCCTCCGGACATCAAAGGCCGAGCGTCCATCTTTAAAGTCCACCTGCGTCCTCTGAAGCTGGAGACGGAGCTGGACAAAGACGCTCTGGCCAGGAAGATGGCCGCCCTCACACCTGGCTTCTCAGGTACACATCTTGCTAACGTCTGCAACGAGGCGGCTCTGATCGCCGCTCGCCACCTTTCAGACGCCATCAACCAGAAACACTTTGAACAGGCCATCGAGAGAGTCATCGGGgGTCTGGAGAAGAAGACCCAGGTGCTGCAGCCGGAGGAGAAGAAGACCGTGGCGTACCACGAGGCCGGCCACGCCGTCGCCGGCTGGTTCCTGGAGCACGCTGACCCGCTGCTGAAGGTCTCACTTCctgtctgact

Function

symbol description
afg3l2 Predicted to enable ATP binding activity; peptidase activity; and zinc ion binding activity. Predicted to be involved in mitochondrial protein processing and protein-containing complex assembly. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of m-AAA complex. Human ortholog(s) of this gene implicated in optic atrophy 12; spastic ataxia; spastic ataxia 5; and spinocerebellar ataxia type 28. Orthologous to human AFG3L2 (AFG3 like matrix AAA peptidase subunit 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU148899 False 221 lncRNA 0.63 2 174572 175357
TU148917 False 691 TUCP 0.59 5 158706 173988
TU148952 False 678 TUCP 0.57 5 146254 156610
XM_039816024.1 True 1950 mRNA 0.60 13 146242 175372

Neighbor

gene id symbol gene type direction distance location
LOC120568468 rasal2 coding downstream 7490 182862 ~ 211334 (+)
LOC120569035 LOC103479952 coding downstream 34873 210245 ~ 213602 (+)
LOC120567748 NA coding downstream 137636 313008 ~ 313994 (+)
LOC120569058 NA coding downstream 154979 330351 ~ 331330 (+)
LOC120567754 NA coding downstream 180686 356058 ~ 357039 (+)
G110682 NA non-coding upstream 14381 76407 ~ 131861 (+)
G110688 NA non-coding upstream 36509 92583 ~ 109733 (+)
G110687 NA non-coding upstream 58339 87006 ~ 87903 (+)
G110686 NA non-coding upstream 60315 85512 ~ 85927 (+)
G110671 NA non-coding upstream 97470 21719 ~ 48772 (+)
G110707 NA non-coding downstream 20617 195989 ~ 200502 (+)
LOC120567641 NA non-coding downstream 54717 230089 ~ 234490 (+)
G110711 NA non-coding downstream 69708 245080 ~ 246544 (+)
G110706 NA non-coding downstream 91768 267140 ~ 288259 (+)
G110705 NA non-coding downstream 112232 287604 ~ 381279 (+)
G110678 NA other upstream 73018 72687 ~ 73224 (+)
G110704 NA other downstream 7492 182864 ~ 261927 (+)
G110768 NA other downstream 348078 523450 ~ 525151 (+)
G110789 NA other downstream 436741 612113 ~ 615996 (+)
dnajc1 dnajc1,LOC106533614 other downstream 562433 737805 ~ 756498 (+)
si:dkey-154p10.3 NA other downstream 807143 982515 ~ 1002554 (+)

Expression


Co-expression Network