G111476


Basic Information

Item Value
gene id G111476
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2942775 ~ 2948485 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU150138
GGAAAagacaattctgattggtttaaagaaatgctaataaagcatagcacgttttcctcccatcccagaatgctttgtGGTCTAGTCAGACCTTCCttcgcagctctgtggaggagggtctggtcttGCCTCCATTAAGTTTGAAATGGTAACAATATGAATAATAATTTTCAGATGAAAGGCTGCATCAGAGTGCTGAAGGAGCAGCCGCCCAGCGGTGTGGAGGGATTACTCAACGCTCTCAGGTATACGACCAAACATCTGAACGACGAGACGACCTCCAAGCACATCAAACACATGCTGCTGCCAAATTAACTTCGCCGCGGGACGCCAAACTGGAACCAAAACAGGGAGCCTGAAGTGCTGTGGTCCACATTTCAAAAGAAACTACTGAACAAAACATTTAGCTAATATTtctgtgttttaattttaattaaagcgtaactctcgaccaaaatgcaacctagtgGTGTTTTGGTGAATGTa
>TU150141
GGAAAagacaattctgattggtttaaagaaatgctaataaagcatagcacgttttcctcccatcccagaatgctttgtGGTCTAGTCAGACCTTCCttcgcagctctgtggaggagggtctggtcttGCCTCCATTAAGTTTGAAATGGTAACAATATGAATAATAATTTTCAGATGAAAGGCTGCATCAGAGTGCTGAAGGAGCAGCCGCCCAGCGGTGTGGAGGGATTACTCAACGCTCTCAGGTATACGACCAAACATCTGAACGACGAGACGACCTCCAAGCACATCAAACACATGCTGCTGCCAAATTAACTTCGCCGCGGGACGCCAAACTGGAACCAAAACAGGGAGCCTGAAGTGCTGTGGTCCACATTTCAAAAGAAACTACTGAACAAAACATTTAGCTAATATTtctgtgttttaattttaattaaagcgtaactctcgaccaaaatgcaacctagtgGTGTTTTGGTGAATGTaccccgagtcaaactttcgtttaaaagcatatttaggacgaagcgccacttttaagattcaccgtattctcgtttttcggtcaaatggccttttgagtgggagtgctagggggcgctctcatgctagtctcaaaataactatttttaaaccactgagaaggctcgacacaacatgagactatGGTCCAAGTATCACTATAACTATATACCataaccaggggctctacaccttaactacaccggtgaccaatagatatactataaccaggagctctacaccttaactacaccggtgaccaagatatatactataaccaggagctctacaccttaactacaccggtgaccaagatatatactataaccaggagctctacaccttaactacaccagtgaccaatagatatactataaccaggagctctacaccttaactacaccggtgaccaatagatatatactataaccaggagctctacaccttaactacaccggtgaccaatagatatactataaccaggagctctacaccttaactacaccggtgaccaatagatatataccataaccaggagctctacaccttaactacaccggtgaccaatagatatatactataaccaggagctctacaccttaactccaccagtgaccaatagatatactataaccaggagctctacaccttaactacaccagtgaccaatagatatactataaccaggagctctacaccttaactacaccagtgaccaatagatatactataaccaggagctctacaccttaactacaccagtgaccaagatatatattataaccaggagctctacaccttaactacaccggtgaccaagatatactataaccaggagctctacaccttaactacaccggtgaccaatagatatactataaccaggagctctacc

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko04662 B cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU150138 False 486 lncRNA 0.44 2 2942775 2946877
TU150141 True 1417 lncRNA 0.42 3 2942775 2948485

Neighbor

gene id symbol gene type direction distance location
LOC120568826 LOC106675582 coding upstream 208877 2732606 ~ 2733898 (+)
nmnat2 nmnat2 coding upstream 253559 2665824 ~ 2689216 (+)
LOC120568517 NA coding upstream 477935 2463673 ~ 2464840 (+)
LOC120567899 NA coding upstream 720884 2221448 ~ 2221891 (+)
LOC120567900 NA coding upstream 763172 2179109 ~ 2179603 (+)
ptmab NA coding downstream 350379 3298864 ~ 3304226 (+)
LOC120568524 NA coding downstream 647930 3596415 ~ 3600572 (+)
LOC120568326 NA coding downstream 767081 3715566 ~ 3715955 (+)
LOC120568529 NA coding downstream 855413 3803898 ~ 3807690 (+)
LOC120568332 NA coding downstream 867335 3815820 ~ 3825434 (+)
G111475 LOC101473605,LOC102292558 non-coding upstream 11330 2910549 ~ 2931445 (+)
G111478 NA non-coding upstream 12153 2914458 ~ 2930622 (+)
G111483 NA non-coding upstream 15627 2924392 ~ 2927148 (+)
G111471 NA non-coding upstream 44935 2897324 ~ 2897840 (+)
G111469 NA non-coding upstream 51317 2891158 ~ 2891458 (+)
G111487 NA non-coding downstream 4123 2952608 ~ 2955109 (+)
G111495 NA non-coding downstream 74556 3023041 ~ 3025573 (+)
G111485 NA non-coding downstream 98000 3046485 ~ 3098747 (+)
G111498 NA non-coding downstream 98454 3046939 ~ 3047847 (+)
G111501 NA non-coding downstream 122081 3070566 ~ 3145702 (+)
G111486 LOC107102160,LOC102799505,LOC103352980 other upstream 1927 2938149 ~ 2940848 (+)
rasal2 NA other upstream 115921 2787779 ~ 2826854 (+)
G111452 NA other upstream 118187 2816944 ~ 2824588 (+)
LOC120568825 NA other upstream 191203 2742424 ~ 2751572 (+)
G111404 NA other upstream 274837 2565135 ~ 2667938 (+)
G111494 NA other downstream 68473 3016958 ~ 3075901 (+)
LOC120567769 LOC102296991,LOC102211951,LOC102799200,LOC101465856 other downstream 439569 3388054 ~ 3399183 (+)
LOC120568331 NA other downstream 543104 3491589 ~ 3506128 (+)
LOC120568327 LOC102295145 other downstream 552194 3500679 ~ 3525115 (+)
LOC120568521 NA other downstream 592502 3540987 ~ 3852034 (+)

Expression


Co-expression Network