G111487


Basic Information

Item Value
gene id G111487
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2952608 ~ 2955109 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU150158
acacacacacacacacacacacacacacacacacacacaaacacacatgcagaagattacaaataatatattacggtgtaaatcctccatcataacagcaatgctctaagggtccaaacgcgcctggcttttaaagggaatgggagatgatctctgattggttgattgcatgttacgcccaaaacacacctctgattaatgaagacactaagtacaacccttttcaACTATGCCCcctggcgcacggacccttttttcccaCCATCAAACTatcaaaagtggatttggacacgccctaaacacacctgcaccaggcgcttcacgccatgCTTTTGGagcgttaaaatagggcccttggtctcaagaccactttttgaaggtctctgTCTCGTCTCAGAATCAACCACATTTCTATTTAGTGTTGTCTCGGTCTCAAATGAAGAGGACTTATTTCAAGACCTGTGAagacttgcgtcgggctttgtgtTGCGCTGccttgcgctgggtgcaagatagggccccaaaGAGTTTGTCCCAGTCTCGATCCACTCGatttggtgatgacttggtctcggtttaggtggtctcgaCTACAACACTGTTTAAATCTCACATTGGTGCTGTTTGTCCAAGTAAGTTTTCAGGTGCAACATCTTCTTGGCCTCTTTACGTCTTGAatcacattcatttttaaaagaCTTATGAGAAATAAAAGAAGGGAAACACATTTGGCGCCTGGAAAACGTCGGCACCTTTAAATAACCATTATGTTTTCCTCTGGTCGAATTTAAcccatttttaaagttttttttaatcaaaaataCGAGTTTCTTTCAAACTAATTGCCCAAAAATTACACAGACGTTCCAAACACGAAATGGGCTGTAATTATGCATCAACATacgttcctctgatcttaaataTTTGCTAAAATATTTCATAAATTAGGCGTAATTTGATatgaattagttttttttgaCTATGAATTCCAaaatgaagtttaaaactaGCGGTAATAAGTTGTAATgaagttggctaagaagatgtaacacagaattggtTGAAGATGtatactttatgctttataaaaCAACAAACGAGGGATGAACTATGAAAAACAACAGCCCACAAGTTCAACTTAATTGCGGCTGCGTTATCCGAACAGTTTTTAAATCGTACGTTTTGATTTTACAAGAGAAAAGACTTCAAGCAAGAAGACTTACTGGTTGTTTTTAGCCAAATGCACATCTGGTTTAACTTCTGTTGTGATAAAGAGCAGCACACAGCCACTgccatacattttcttttatagGAAGCATCTTTGATAATCACAAACTGACTCTTTTGAGACGATAAACCAAACAAGGGGTTTCCAAATTGTATCCTCATTTCTGTATCTTGTTAGTAATCATTGTAAACATAGTTTTTATTCCAGTTTTTTGCAGCTACAATCAATAGTCGTTCTAAAGAAAGCTTGATGTCGGTACGATTTGACAATCAGTAAGAACTAGAAAGAGCACTCGGAGAGTCCGCCAAAGGCCACGCTCTTATCGCACAATGTTAACGACCGTTTAAACCTGCTATGTGATTCAAATCTGCTCCAAATGTGTATGGGTTCATCCTCGGCCCATGCTTCATctttccaccaagtttcatggaAATCGGGCCAAAGGTTTTTCTGTAATCcggctgacagacagacaacaaactAACCAACAATCCAAACCGGaaacttaaaggggaactatgcaggtttttagcttaattgactttaactgaacagcttcggagtcattggaatggttatgtgactttttttcgggttgaatggtggtcgtctcgcttccccctagcgcctgTCAGCATCAGGcagtatcgcgtgatatcaggtctcgccatgtaacaaattgcttcatgGCCctgcccattcaggaaccggctaacaagtttttcacactatcgtcatggctgagccggcaaaaaagaagcagaaagctaggaaagcatggaaagcattgtcggaggaacagagaaagaggaaactgcagactgaccgagagaggagtcagacacgagtaaacataggagctgccaaatatctattctgaagctaTAGGGGGAGCTCTgtagagaaacctgccagcaaacagagagaaaacagcaaagaaatgGCTAAAACTGCATAGCACCCCTTTAAACTCCttggttttatatatataaagctgTGAAATGTGGAGGCTAACCAGTTAGCACTGTTAGCACTGACTAGTTAGGAATCAGCTACGAGACGGAGAACCACTTTGCGGTACGAAGACGAGGGAAACCTCAGACTGATGTTTGAACTGATCTGATCAGACTggaaatctttttatttttttgtgctttgTATGTGAACGCTGCAGCGTCAGGGATTGTATGGCAttaattgttttaaatgaaatgtttcTGTTGGCC

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU150158 True 2454 lncRNA 0.41 2 2952608 2955109

Neighbor

gene id symbol gene type direction distance location
LOC120568826 LOC106675582 coding upstream 218710 2732606 ~ 2733898 (+)
nmnat2 nmnat2 coding upstream 263392 2665824 ~ 2689216 (+)
LOC120568517 NA coding upstream 487768 2463673 ~ 2464840 (+)
LOC120567899 NA coding upstream 730717 2221448 ~ 2221891 (+)
LOC120567900 NA coding upstream 773005 2179109 ~ 2179603 (+)
ptmab NA coding downstream 343755 3298864 ~ 3304226 (+)
LOC120568524 NA coding downstream 641306 3596415 ~ 3600572 (+)
LOC120568326 NA coding downstream 760457 3715566 ~ 3715955 (+)
LOC120568529 NA coding downstream 848789 3803898 ~ 3807690 (+)
LOC120568332 NA coding downstream 860711 3815820 ~ 3825434 (+)
G111476 NA non-coding upstream 4123 2942775 ~ 2948485 (+)
G111475 LOC101473605,LOC102292558 non-coding upstream 21163 2910549 ~ 2931445 (+)
G111478 NA non-coding upstream 21986 2914458 ~ 2930622 (+)
G111483 NA non-coding upstream 25460 2924392 ~ 2927148 (+)
G111471 NA non-coding upstream 54768 2897324 ~ 2897840 (+)
G111495 NA non-coding downstream 67932 3023041 ~ 3025573 (+)
G111485 NA non-coding downstream 91376 3046485 ~ 3098747 (+)
G111498 NA non-coding downstream 91830 3046939 ~ 3047847 (+)
G111501 NA non-coding downstream 115457 3070566 ~ 3145702 (+)
G111506 NA non-coding downstream 144286 3099395 ~ 3107381 (+)
G111486 LOC107102160,LOC102799505,LOC103352980 other upstream 11760 2938149 ~ 2940848 (+)
rasal2 NA other upstream 125754 2787779 ~ 2826854 (+)
G111452 NA other upstream 128020 2816944 ~ 2824588 (+)
LOC120568825 NA other upstream 201036 2742424 ~ 2751572 (+)
G111388 NA other upstream 374677 2577121 ~ 2577931 (+)
G111494 NA other downstream 61849 3016958 ~ 3075901 (+)
LOC120567769 LOC102296991,LOC102211951,LOC102799200,LOC101465856 other downstream 432945 3388054 ~ 3399183 (+)
LOC120568331 NA other downstream 536480 3491589 ~ 3506128 (+)
LOC120568327 LOC102295145 other downstream 545570 3500679 ~ 3525115 (+)
LOC120568521 NA other downstream 585878 3540987 ~ 3852034 (+)

Expression


Co-expression Network