LOC120567903


Basic Information

Item Value
gene id LOC120567903
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2341462 ~ 2405093 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU150248
CTGAAACTGGTTTGGCTATAAGTGCACTTTACGAGTTTGACTGCTGAAGACTGATAATTATCACTGTCATAACtaataatcactttttttgtctgATATCTTTCAGAGAAAAGTTCACCTGAGCCATGTGACGACACTCTGAAACCAGATCCGAAGGTGAACTTCGTGACTCTGATCGTCCTTGGCCTCAGGCTGCTCTTCCTCAAGACCATTGCCTTCAACGTGCTGTTGACTCTACGGCTGTGGATCAGTCAGTaaaCTCCGCAGACCTTCAGCAGAAAAAGATGACGGATTCACACAACGACTTCCTGATCAAGTGAATGAAACGTCGCTCGGCTTCATTTCTGCTTTCATCGCCGTCTCATCCTCTCTTTCATGTTTAATAACTTGTGTAAATCACATCAGCTGTTGATCTGTTTACGACAGCGTCCTGTAAAACATGTCCTCTTCATTCCTGTCTGTGAGTGATGTTGCTTTATATCCTGCTGATGTAAAtatcacattttcttttgattTAACAGACtgattgttttgcttttttataaaaCTGTTCGGTGTGATATTTCCTGTGTGATG
>TU150255
ACTATGTTTATCTGAATGGAGTTCGGTTGAGTTGAGTTTATGTCACGATGCTTCATGTTGTGTGACTACTGGAAGAACAGATAAGATGATCTTTGGAAGAGGAACCAGACTAAACATTGAACCCTatGAGAATCTCGAGCCGTCCGTCTTCAAACTGTCAGGGACAAAAACCACGGCATGCCTGGCCACTGGGTTCAGCagacacaacaaaacaacaacagacccTAAACAAACATACTGGGGCATTTTCAATAAAACTGCACCGGCTGTCAGGATATCAGGCGACTCGCTGTACAACCAGGTGGCCATTTTATCTGGTGAAGCGGATGAAGAACAATGTGAGAAAAGTTCACCTGAGCCATGTGACGACACTCTGAAACCAGATCCGAAGGTGAACTTCGTGACTCTGATCGTCCTTGGCCTCAGGCTGCTCTTCCTCAAGACCATTGCCTTCAACGTGCTGTTGACTCTACGGCTGTGGATCAGTCAGTaaaCTCCGCAGACCTTCAGCAGAAAAAGATGACGGATTCACACAACGACTTCCTGATCAAGTGAATGAAACGTCGCTCGGCTTCATTTCTGCTTTCATCGCCGTCTCATCCTCTCTTTCATGTTTAATAACTTGTGTAAATCACATCAGCTGTTGATCTGTTTACGACAGCGTCCTGTAAAACATGTCCTCTTCATTCCTGTCTGTGAGTGATGTTGCTTTATATCCTGCTGATGTAAAtatcacattttcttttgattTAACAGACtgattgttttgcttttttataaaaCTGTTCGGTGTGATATTTCCTGTGTGATG
>TU150264
TGACTAGCTCTGGAGTTGCTAAACTCATCTTCGGCTCTGGCACTAAACTGACGGTTGACTCCAatGAGAATCTCGAGCCGTCCGTCTTCAAACTGTCAGGGACAAAAACCACGGCATGCCTGGCCACTGGGTTCAGCagacacaacaaaacaacaacagacccTAAACAAACATACTGGGGCATTTTCAATAAAACTGCACCGGCTGTCAGGATATCAGGCGACTCGCTGTACAACCAGGTGGCCATTTTATCTGGTGAAGCGGATGAAGAACAATGTGAGAAAAGTTCACCTGAGCCATGTGACGACACTCTGAAACCAGATCCGAAGGTGAACTTCGTGACTCTGATCGTCCTTGGCCTCAGGCTGCTCTTCCTCAAGACCATTGCCTTCAACGTGCTGTTGACTCTACGGCTGTGGATCAGTCAGTaaaCTCCGCAGACCTTCAGCAGAAAAAGATGACGGATTCACACAACGACTTCCTGATCAAGTGAATGAAACGTCGCTCGGCTTCATTTCTGCTTTCATCGCCGTCTCATCCTCTCTTTCATGTTTAATAACTTGTGTAAATCACATCAGCTGTTGATCTGTTTACGACAGCGTCCTGTAAAACATGTCCTCTTCATTCCTGTCTGTGAGTGATGTTGCTTTATATCCTGCTGATGTAAAtatcacattttcttttgattTAACAGACtgattgttttgcttttttataaaaCTGTTCGGTGTGATATTTCCTGTGTGATG
>TU150265
TGACGGCTCAGAGAGAGAAACTTTATTTCGGCAGAGGAACCAAACTAACGGTTGATTCTGatGAGAATCTCGAGCCGTCCGTCTTCAAACTGTCAGGGACAAAAACCACGGCATGCCTGGCCACTGGGTTCAGCagacacaacaaaacaacaacagacccTAAACAAACATACTGGGGCATTTTCAATAAAACTGCACCGGCTGTCAGGATATCAGGCGACTCGCTGTACAACCAGGTGGCCATTTTATCTGGTGAAGCGGATGAAGAACAATGTGAGAAAAGTTCACCTGAGCCATGTGACGACACTCTGAAACCAGATCCGAAGGTGAACTTCGTGACTCTGATCGTCCTTGGCCTCAGGCTGCTCTTCCTCAAGACCATTGCCTTCAACGTGCTGTTGACTCTACGGCTGTGGATCAGTCAGTaaaCTCCGCAGACCTTCAGCAGAAAAAGATGACGGATTCACACAACGACTTCCTGATCAAGTGAATGAAACGTCGCTCGGCTTCATTTCTGCTTTCATCGCCGTCTCATCCTCTCTTTCATGTTTAATAACTTGTGTAAATCACATCAGCTGTTGATCTGTTTACGACAGCGTCCTGTAAAACATGTCCTCTTCATTCCTGTCTGTGAGTGATGTTGCTTTATATCCTGCTGATGTAAAtatcacattttcttttgattTAACAGACtgattgttttgcttttttataaaaCTGTTCGGTGTGATATTTCCTGTGTGATG
>TU150269
ATACTGGTTTGGATAAGATAATCTTTGGAAGAGGAACCAGACTAAACATTGAACCCTatGAGAATCTCGAGCCGTCCGTCTTCAAACTGTCAGGGACAAAAACCACGGCATGCCTGGCCACTGGGTTCAGCagacacaacaaaacaacaacagacccTAAACAAACATACTGGGGCATTTTCAATAAAACTGCACCGGCTGTCAGGATATCAGGCGACTCGCTGTACAACCAGGTGGCCATTTTATCTGGTGAAGCGGATGAAGAACAATGTGAGAAAAGTTCACCTGAGCCATGTGACGACACTCTGAAACCAGATCCGAAGGTGAACTTCGTGACTCTGATCGTCCTTGGCCTCAGGCTGCTCTTCCTCAAGACCATTGCCTTCAACGTGCTGTTGACTCTACGGCTGTGGATCAGTCAGTaaaCTCCGCAGACCTTCAGCAGAAAAAGATGACGGATTCACACAACGACTTCCTGATCAAGTGAATGAAACGTCGCTCGGCTTCATTTCTGCTTTCATCGCCGTCTCATCCTCTCTTTCATGTTTAATAACTTGTGTAAATCACATCAGCTGTTGATCTGTTTACGACAGCGTCCTGTAAAACATGTCCTCTTCATTCCTGTCTGTGAGTGATGTTGCTTTATATCCTGCTGATGTAAAtatcacattttcttttgattTAACAGACtgattgttttgcttttttataaaaCTGTTCGGTGTGATATTTCCTGTGTGATG
>TU150270
TGGAGATCGAAAGACAATCTTTGGAAGAGGAACCAGACTAAACATTGAACCCTatGAGAATCTCGAGCCGTCCGTCTTCAAACTGTCAGGGACAAAAACCACGGCATGCCTGGCCACTGGGTTCAGCagacacaacaaaacaacaacagacccTAAACAAACATACTGGGGCATTTTCAATAAAACTGCACCGGCTGTCAGGATATCAGGCGACTCGCTGTACAACCAGGTGGCCATTTTATCTGGTGAAGCGGATGAAGAACAATGTGAGAAAAGTTCACCTGAGCCATGTGACGACACTCTGAAACCAGATCCGAAGGTGAACTTCGTGACTCTGATCGTCCTTGGCCTCAGGCTGCTCTTCCTCAAGACCATTGCCTTCAACGTGCTGTTGACTCTACGGCTGTGGATCAGTCAGTaaaCTCCGCAGACCTTCAGCAGAAAAAGATGACGGATTCACACAACGACTTCCTGATCAAGTGAATGAAACGTCGCTCGGCTTCATTTCTGCTTTCATCGCCGTCTCATCCTCTCTTTCATGTTTAATAACTTGTGTAAATCACATCAGCTGTTGATCTGTTTACGACAGCGTCCTGTAAAACATGTCCTCTTCATTCCTGTCTGTGAGTGATGTTGCTTTATATCCTGCTGATGTAAAtatcacattttcttttgattTAACAGACtgattgttttgcttttttataaaaCTGTTCGGTGTGATATTTCCTGTGTGATG
>XM_039814972.1
AGGAACTGGAGACAAGATGATTTTCGGGAGAGGAACTCCGCTCAGAGTCGACTCCGatGAGAATCTCGAGCCGTCCGTCTTCAAACTGTCAGGGACAAAAACCACGGCATGCCTGGCCACTGGGTTCAGCagacacaacaaaacaacaacagacccTAAACAAACATACTGGGGCATTTTCAATAAAACTGCACCGGCTGTCAGGATATCAGGCGACTCGCTGTACAACCAGGTGGCCATTTTATCTGGTGAAGCGGATGAAGAACAATGTGAGAAAAGTTCACCTGAGCCATGTGACGACACTCTGAAACCAGATCCGAAGGTGAACTTCGTGACTCTGATCGTCCTTGGCCTCAGGCTGCTCTTCCTCAAGACCATTGCCTTCAACGTGCTGTTGACTCTACGGCTGTGGATCAGTCAGTaaaCTCCGCAGACCTTCAGCAGAAAAAGATGACGGATTCACACAACGACTTCCTGATCAAGTGAATGAAACGTCGCTCGGCTTCATTTCTGCTTTCATCGCCGTCTCATCCTCTCTTTCATGTTTAATAACTTGTGTAAATCACATCAGCTGTTGATCTGTTTACGACAGCGTCCTGTAAAACATGTCCTCTTCATTCCTGTCTGTGAGTGATGTTGCTTTATATCCTGCTGATGTAAAtatcacattttcttttgattTAACAGACtgattgttttgcttttttataaaaCTGTTCGGTGTGATATTTCCTGTGTGATGCTGTTAAAATAAAGACAGTTAAGAAAACAACAGA

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04062 Chemokine signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
TU150248 False 576 lncRNA 0.41 3 2341496 2345722
TU150255 True 811 TUCP 0.44 5 2341496 2388297
TU150264 False 749 lncRNA 0.45 5 2341496 2363712
TU150265 False 746 lncRNA 0.45 5 2341496 2403042
TU150269 False 743 lncRNA 0.44 5 2341496 2375139
TU150270 False 739 lncRNA 0.45 5 2341496 2392945
XM_039814972.1 False 776 mRNA 0.45 5 2341462 2405093

Neighbor

gene id symbol gene type direction distance location
LOC120568497 NA coding downstream 577317 1756621 ~ 1764145 (-)
LOC120567872 NA coding downstream 906187 1433235 ~ 1435275 (-)
LOC120568025 LOC103365692,LOC101173737 coding downstream 913148 1415156 ~ 1428314 (-)
sft2d3 sft2d3 coding downstream 1135921 1203988 ~ 1205541 (-)
LOC120568681 LOC102798692,LOC102306166,LOC101470701,LOC102196346 coding downstream 1204911 1120371 ~ 1136551 (-)
lamc1 lamc1,LOC103398751 coding upstream 113758 2518851 ~ 2601477 (-)
smg7 smg7 coding upstream 220745 2625838 ~ 2662765 (-)
lamc2 NA coding upstream 298266 2703359 ~ 2728546 (-)
LOC120568009 NA coding upstream 444932 2850025 ~ 2852388 (-)
LOC120568013 NA coding upstream 449830 2854923 ~ 2857623 (-)
G111369 NA non-coding downstream 1982 2337471 ~ 2339480 (-)
G111354 LOC108267897 non-coding downstream 99247 2241979 ~ 2242215 (-)
G111339 NA non-coding downstream 221134 2113915 ~ 2120328 (-)
G111337 NA non-coding downstream 259029 2076124 ~ 2082433 (-)
G111308 NA non-coding downstream 325589 1991544 ~ 2015873 (-)
G111560 NA non-coding upstream 8944 2414037 ~ 2625319 (-)
G111561 NA non-coding upstream 24832 2429925 ~ 2430694 (-)
G111559 NA non-coding upstream 29231 2434324 ~ 2528321 (-)
G111574 NA non-coding upstream 149330 2554423 ~ 2554819 (-)
G111575 NA non-coding upstream 150313 2555406 ~ 2556263 (-)
LOC120567890 NA other downstream 597623 1743300 ~ 1743839 (-)
G111226 NA other downstream 923503 1412956 ~ 1417959 (-)
LOC120568022 NA other downstream 931934 1391808 ~ 1409528 (-)
dhx9 dhx9 other downstream 950924 1353022 ~ 1390538 (-)
mfn1a LOC102798404,LOC103374728,LOC101171942 other downstream 1026617 1296833 ~ 1314845 (-)
G111573 NA other upstream 168211 2573304 ~ 2578014 (-)
LOC120568519 dlg1,LOC106568684,LOC105023059 other upstream 493122 2898215 ~ 3142454 (-)
LOC120568005 NA other upstream 799194 3204287 ~ 3229147 (-)
LOC120568520 LOC101465856,LOC102211951,LOC102296991,LOC100703857,LOC103352978,LOC102799200 other upstream 909553 3314646 ~ 3371775 (-)
LOC120569104 NA other upstream 1040307 3445400 ~ 3456534 (-)

Expression


Co-expression Network