LOC120568521


Basic Information

Item Value
gene id LOC120568521
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3540987 ~ 3852034 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU150565
AGACTGGTCCTCTGGAGGAGCTGCCCCCTGATGATATAGAACAGCTGGAGATCAGAGAGTCAGGACACACCGCCTCCATCTTGCTGATCCATCAGAAAGAGAACAGCACATATAAATACCGCTGTGATGTCCTACATGAGGGGGGGACAGTGGAGGCCCAAACAGAACAAGaGGTTCCAGCTCCAGCAGCCTCCTGTCCTCCAGAGAGAGATCCACCAGACCAGCTAGCTCTGGAGGAAGCTGACTtgtcctTCCAGTCCCAGTGCAGGGTGAAGCTGTTCTGTCTGCTGTACACCCAGCTGATAGTGAAGAGTCTGGTGTACTGTTGTGGACTCTCTCTGCTGATGATCCTCAGAAACAAGGGACCGTCCACCAGCTGCTCACATGCTGACTGACTGTTTTCTGCTCGACTTTTCTCGCCTTCAAATCTCATCAATTCATctcatttatcactttgatCAGTATTCA
>TU150571
caCACAGAGCTGACAGTGATGAAGGCTTGGTGACTGTGTTCAGCAGTGATTCAGCTTCATGTGGAGATGCTGtcaaagagagcagaggagtAGATGACTGACATTTGTCACTGCAACTCCAAACATTTCActgcttttctgtttcagaGGTTCCAGCTCCAGCAGCCTCCTGTCCTCCAGAGAGAGATCCACCAGACCAGCTAGCTCTGGAGGAAGCTGACTtgTCCTTCCAGTCCCAGTGCAGGGTGAAGTTGTTCTGTCTGCTGTACACCCAGCTGATAGTGAAGAGTCTGGTGTACTGCTGTGGACTCTCTCTGCTGATGATCCTCAGAAACAAGGGACCGTCCACCAGCTGCTCACATGCTGACTGACTGTTTTCTGCTCGACTTTTCTCGCCTTCAAATCTCATCAATTCATctcatttatcactttgatCACTATTCACATATATCAATTATGACTTGTTGTAGTTGTCATCTTAATAATATAAATACCAGCCCGTTCTCATTC
>TU150572
AGCGCCGCCATCTTGCTGATCCATCAGCAAGAGAACAGCGAATATAAATACTGCTGCTTCGTCCAGCACGAGTGGTTTACAGTGAAGGCCCAAACAGAACAAGaGGTTTCTACTCTTCCACCATCTCCAACGTCTCTTCCACCAGCAGCTTCTGTCCCGTCTCAGTACCTCAGTACAGTGGAGGCCCAAACAGAACAAGAGGTTTCTACTATTCCACCATCAGCTTCTGTCCCGTCTCAGTACCAAGTGAAGCTTCTCTGTCTGCTGTACACCCAGCTGATAGTGAAGAGTCTGGTGTACTGCTGTGGACTCTCTCTGCTGATGATCCTCAGAAACAAGGGACCATCCACCAGCTGAACACATGCTGACTGACTGTTTTCTGCTCACCTTTTCTCACCATCAAATCTCATAAATTCATCTAATTCATCACTTTGATCAGTATTGACAAATATAAATGATGATGTGTTGTAGTTGTCATCCTAAACATactcatatataaatatatttttgattaCTAAGGGTGTATCTGTGTAGTGTTATTTTAATACTATTTGATACTGATT
>TU150579
AGACTGGTCCTCTGGAGGAGCTGCCCCCTGATGATATAGAACAGCTGGAGATCAGAGAGTCAGGACACACCGCCTCCATCTTGCTGATCCATCAGAAAGAGAACAGCACATATAAATACCGCTGTGATGTCCTACATGAGGGGGGGACAGTGGAGGCCCAAACAGAACAAGaGGTTCCAGCTCCAGCAGCCTCCTGTCCTCCAGAGAGAGATCCACCAGACCAGCTAGCTCTGGAGGAAGCTGACTGTAAGATCACCTGCTGACTCTCCTTTAATAACTATGTTTCCTTTTGCACTTCAGCTTTTGTTTTCAATGCCAACACTTAAagtcactgtcctggc
>XM_039816094.1
ATGGGAGATGTGAGGAGCTGTTAGAAACCACGTGGCCCTCGTCTGATCTCACAGCTCGTCCTTGTTTGGCCTCAGCTGCATCAGAGCGCCACTTCTCCCCAGGTTCACCAGAGGAAACACCACTGAACTAAATGCTTttcctcccagctgctgctctgtgctgtctgtgttcAGCGCTGGCTGCCATGGCAACACAGCTGATTCAGGATGATTTAACATTGACCAGGAGAGTTGGTGGAGACGTCTCCTTCAGCTGTCGAGGCACTGGGCAGTGTGCCACTGATTTTGTACTCTGGCACCAGAAGAGAGACACCGAAACATTCACAAGGATTCTTCGTATTGATACGAGGGATGGTGATGTTATGAGAAGTTACAATCATCCTCAGAAAGATGATTTCTCAGCTGTGAATGAAAAGAACGGCTGTGAGTTGCAGATCCAGAGCGTTAAACTCGATCATTCAGCCACCTACTACTGCTCCTGTTGGATCCccacagtgagaaatgctcCCTGCAGCCTGAACAAAAACCTCCAGATGAACAGATGTCAAACAGTGTTTGTGACAGGAAGAGATCAGTATGTGGGAGAAAAGGACCACTTCACTGCAGAGTCTGGGATTCAGCTCCACCAGGGTACAGGAGATCCAGTCAGCAGCAACACCGAGGGAGAAGAAGATCAGCAAGCCAGGCCGCTGCAGCCACACCCGGTCCATCCGTCCAGACCGTTGTCCCCCTCGGTAAGAGGTCTAGCCTCCTTTTATAGGGAGTGGTCTGATCAGCTGGCCAATCAGATCGCTGATGTGAACGGGGTTCTACAGTACTGGTTAATAATTTGGACTGGTTCACCTCAGCAGACACATTCAACAGCAGTAAGGGTTTTTGTATCACTCAGTTTCACTGTGGGGGGCAGATGGTACTACTTGATCTTTGGCTCTGGAACTAAACTGATTGTATCAGATGAGCCGGTAGTGAAGCCCGTGGTGAGCGTGTACCCAGCAGCATCCAGAGCCCACCTGGAGGGGAAGAGCTCCCTGCTGTGTCTGGCCTCAGCCATGTTTCCTCCTCTGGTCCAGTTCTCCTGGAAAAGACGAAATGAGACTGGTCCTCTGGAGGAGCTGTCCTCTGATGATATAGAGCAGCTGGAGATCAGAGAGTCAGGACACACCGCCTCCATCTTGCTGATCCATCAGAAAGAGAACAGCACATATAAATACCGCTGTGATCATTTGTCACTGCAACTCCAAACATTTCActgcttttctgtttcagaGGTTCCAGCTCCAGCAGCCTCCTGTCCTCCAGAGAGAGATCCACCAGACCAGCTAGCTCTGGAGGAAGCTGACTtgTCCTTCCAGTCCCAGTGCAGGGTGAAGTTGTTCTGTCTGCTGTACACCCAGCTGATAGTGAAGAGTCTGGTGTACTGCTGTGGACTCTCTCTGCTGATGATCCTCAGAAACAAGGGACCGTCCACCAGCTGCTCACATGCTGACTGACTGTTTTCTGCTCGACTTTTCTCGCCTTCAAATCTCATCAATTCATctcatttatcactttgatCACTATTCACATATATCAATTATGACTTGTTGTAGTTGTCATCTTAATAATATAAATACCAGCCCGTTC

Function

GO: NA

KEGG:

id description
ko04662 B cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU150565 False 468 lncRNA 0.51 3 3850107 3852034
TU150571 False 510 lncRNA 0.46 2 3551166 3552023
TU150572 False 563 lncRNA 0.43 3 3659014 3660133
TU150579 False 341 lncRNA 0.50 2 3850107 3850875
XM_039816094.1 True 1623 mRNA 0.50 7 3540987 3552017

Neighbor

gene id symbol gene type direction distance location
ptmab NA coding upstream 236761 3298864 ~ 3304226 (+)
LOC120568826 LOC106675582 coding upstream 807089 2732606 ~ 2733898 (+)
nmnat2 nmnat2 coding upstream 851771 2665824 ~ 2689216 (+)
LOC120568517 NA coding upstream 1076147 2463673 ~ 2464840 (+)
LOC120567899 NA coding upstream 1319096 2221448 ~ 2221891 (+)
vcpip1 vcpip1,LOC102795816 coding downstream 84597 3936631 ~ 3949566 (+)
dusp28 dusp28,LOC102795231 coding downstream 107558 3959592 ~ 3964053 (+)
LOC120568531 NA coding downstream 134411 3986445 ~ 3992589 (+)
LOC120568532 NA coding downstream 143583 3995617 ~ 3997859 (+)
crfb16 NA coding downstream 199286 4051320 ~ 4065021 (+)
G111749 NA non-coding upstream 47893 3492873 ~ 3493094 (+)
G111744 NA non-coding upstream 53780 3486855 ~ 3487207 (+)
G111735 NA non-coding upstream 84434 3455649 ~ 3456553 (+)
G111733 NA non-coding upstream 87218 3452971 ~ 3453769 (+)
G111732 NA non-coding upstream 88088 3452171 ~ 3452899 (+)
G111819 NA non-coding downstream 98910 3950944 ~ 3957274 (+)
G111821 NA non-coding downstream 101994 3954028 ~ 4018396 (+)
G111832 LOC102198835,LOC101471160,LOC102289605,LOC100700585,LOC102794384,LOC101068328 non-coding downstream 149980 4002014 ~ 4010693 (+)
G111844 NA non-coding downstream 233068 4085102 ~ 4087986 (+)
G111851 LOC104960641,LOC102303545,LOC106675581,LOC102799398,LOC102203668 non-coding downstream 238993 4091027 ~ 4139026 (+)
LOC120568327 LOC102295145 other upstream 15872 3500679 ~ 3525115 (+)
LOC120568331 NA other upstream 34859 3491589 ~ 3506128 (+)
LOC120567769 LOC102296991,LOC102211951,LOC102799200,LOC101465856 other upstream 141804 3388054 ~ 3399183 (+)
G111494 NA other upstream 465086 3016958 ~ 3075901 (+)
G111484 NA other upstream 474958 2931639 ~ 3066029 (+)
G111848 NA other downstream 236610 4088644 ~ 4137543 (+)
G111850 LOC102799398 other downstream 238474 4090508 ~ 4138933 (+)
tmeff1a tmeff1,LOC102775778 other downstream 360090 4212124 ~ 4326186 (+)
dnaaf11 NA other downstream 646960 4498994 ~ 4592347 (+)
G111910 NA other downstream 693391 4545425 ~ 4546082 (+)

Expression


Co-expression Network