LOC120568327 (LOC102295145)


Basic Information

Item Value
gene id LOC120568327
gene name LOC102295145
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3500679 ~ 3525115 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU150598
GGCTGATGGGAGATGTGAGGAGCTGTTAGAAACCACGTGGCCCTCGTCTGATCTCACAGCTCGTCCTTGTTTGGCCTCAGCTGCATCAGAGCGCCACTTCTCCCCAGGTTCACCAGAGGAAACACCACTGAACTAAATGCTTttcctcccagctgctgctctgtgctgtctgtgttcAGCGCTGGCTGCCATGGCAACACAGCTGATTCAGGAGGATTTAACATTGACCAGGAGAGTTGGTGGAGACGTCTCCTTCAGCTGTCGAGGCACTGAGCAGTGTGACGGGGGacttaggaacattttggggtaaCTTCAGCCCCCCTAAATGACGTCCATGGCCGATTCCAATCCAGAGATCCAGAACCAGGAATTCTGTGGTGCCGCTCTTCTTCTGTCAGTGGagaaatgtaaaatcaatgggTAGCCTGCTCGTAGCCCGGCAACTTTAAACCAGTCTCGGGTGACTAGAATGACAACTTTCCTTTCCTCTACTTCAAGTGGGCTCATCAACAATACTGCCGTGTCTGCTGCTCTGCCGTCGGCCCCAGGATCTTACACCTTCACAGGAATGAACAACTAGTAAAAACGACTCCTTTAGTTCAAATGCTAAAACATACCCACGGATCAGTGTGGGAGAAAAGGACCACTTCACTGCAGAGTCTGGGATTCAGCTCCACCAGGGTACAGGAGATCCAGTCAGCAGCAACACCGAGGGAGAAGAAGATCAGCAAGCCAGGCCGCTGCAGCACACAGCCGGTCCATCCGTCCAGAGCATTGTCCCCCTCAGTAAGCGATCTAGCCTCCTTTTATAGGGACTGGTCTGATCAGCTGGCCAATCAGATCGCTGATGTGAACGGGGTTCTACAGGTGGGTCAAttagtgtttgtttttgcagttCGTGAAAGAGGGAAAAGATAAATTGTCCACAGCAACATATAATAAATTAAACCCACAGCAAACAATATCAGAGTTTTAAGGCAAAAATCGATCAATaacaattatacaaaataaactaagGTCATCAATCACACTGCTCCacttgttttatattatatgaCACTAGTACAGCATACATAAAGACATAAAAGAAGAGACAGTCATGTTAATATGAACATTAGAGAAACACATCATGGAGCTGGAATATGATACTGGTTAATAATTTGGACTGGTTCACCTCAGCAGACACATTCAACAGCAGTAAGGGTTTTTGTATCACTCAGTTTCACTGTGGGAGGCAGGTAAACGGTACTTGATCTTTGGCTCTGGAACTAAACTGTTTGTATCAGATGAGCCGGTAGTGAAGCCCGTGGTGAGCGTGTACCCAGCAGCATCCAGAGCCCACCTGGAGGGGAAGAGCTCCCTGCTGTGTCTGGCCTCAGCCATGTTTCCTCCTCTGGTCCAGTTCTCCTGGAAAAGACGAAAGGAGAATGGTCCTCTGGAGGAGCTGTCCTCTACTGAGGGAGAGCAGCTGGAGATCAGAGAGTCAGGACACACCGCCTCCATCTTGCTGATTAATCAGCAAAAGAACAGCAAATATAAATACCGCTGTGACGTCCTACATGAGGGGGGGACAGTGGTGGCCCAAACAGAACAAGAGGTTTCTACTCTTCCACCACTGTCTCAGTACCAAGTGAAGTTGTTCTGTCTGCTGTACACCCAGCTGATAGTGAAGAGTCTGGTGTACTGCTGTGGACTCTCTCTGCTGATGATCCTCAGAAACAAGGGACCGTCCACCAGCTGC
>TU150599
cGTCTATCAATGAGGATAAATCGAATTGTTATTATTTAGGGGGgtttaggaacattttggggtagcttcagcccccTAAACGACGTCCATGGCCGATTCCAATCCAGAGATCCAGAACCAGGATTTCTGTGGTGCCGCTCTGCTTCTGTCAGCGGagaaatgtaaaatcaatgggTAGCCTGCTCGTAGCCCGGCAACTTTAAACCAGTCTCGGGTGACTAGAATGACAACTTTCCTTTCCTCTACTTCAAGTGGGCTCATCAACAGTACTGCCGTGTCTGCTGCTCTGCCGTCGGCCCCAGGATCTGGCACCTTCACAGGAATGAACAACTAGTAAAAACGACTCCTTTAGTTCAAATGCTAAAACATACCCACGGATCAGTGTGGGAGAAAAGGACCACTTCACTGCAGAGTCTGGGATTCAGCTCCACCAGGGTACAGGAGATCCAGTCAGCAGCAACACCGAGGGAGAAGAAGATCAGCAAGCCAGGCCGCTGCAGCACACAGCCGGTCCATCCGTCCAGAGCATTGTCCCCCTCAGTAAGCGATCTAGCCTCCTTTTATAGGGACTGGTCTGATCAGCTGGCCAATCAGATCGCTGATGTGAACGGGGTTCTACAGATGAGCCGGTAGTGAAGCCCGTGGTGAGCGTGTACCCAGCAGCATCCAGAGCCCACCTGGAGGGGAAGAGCTCCCTGCTGTGTCTGGCCTCAGCCATGTTTCCTCCTCTGGTCCAGTTCTCCTGGAAAAGACGAAAGGAGAATGGTCCTCTGGAGGAGCTGTCCTCTACTGAGGGAGAGCAGCTGGAGATCAGAGAGTCAGGACACACCGCCTCCATCTTGCTGATTAATCAGCAAAAGAACAGCAAATATAAATACCGCTGTGACGTCCTACATGAGGGGGGGACAGTGGTGGCCCAAACAGAACAAGAGGTTTCTACTCTTCCACCACTGTCTCAGTACCAAGTGAAGTTGTTCTGTCTGCTGTACACCCAGCTGATAGTGAAGAGTCTGGTGTACTGCTGTGGACTCTCTCTGCTGATGATCCTCAGAAACAAGGGACCGTCCACCAGCTGC
>XM_039815754.1
GCAGCCTTATCTGTCTGCTGCAGGGGCTGATGGGAGATGTGAGGAGCTGTTAGAAACCACGTGGCCCTCGTCTGATCTCACAGCTCGTCCTTGTTTGGCCTCAGCTGCATCAGAGCGCCACTTCTCCCCAGGTTCACCAGAGGAAACACCACTGAACTAAATGCTTttcctcccagctgctgctctgtgctgtctgtgttcAGCGCTGGCTGCCATGGCAACACAGCTGATTCAGGAGGATTTAACATTGACCAGGAGAGTTGGTGGAGACGTCTCCTTCAGCTGTCGAGGCACTGAGCAGTGTGACAATACTTATGATTATGTATACTGGTACCagaagagagacaaagaaacatTCACAAGGATTCTGTATATTAGGAGGAATACTGGTGTCATAGAGAAGGAGAGATACAATCATCCTCAGAAAGATGATTTCTCAGCTGTGAATGATCAGAACGTCTGTGAGTTGCAGATCCAGAAGGTTAAACCCGATCATTCAGCCACCTACTACTGCTCCTGTGAGAAGGCAGGTAAACGGTACTTGATCTTTGGCTCTGGAACTAAACTGTTTGTATCAGATGAGCCGGTAGTGAAGCCCGTGGTGAGCGTGTACCCAGCAGCATCCAGAGCCCACCTGGAGGGGAAGAGCTCCCTGCTGTGTCTGGCCTCAGCCATGTTTCCTCCTCTGGTCCAGTTCTCCTGGAAAAGACGAAAGGAGAATGGTCCTCTGGAGGAGCTGTCCTCTACTGAGGGAGAGCAGCTGGAGATCAGAGAGTCAGGACACACCGCCTCCATCTTGCTGATTAATCAGCAAAAGAACAGCAAATATAAATACCGCTGTGACGTCCTACATGAGGGGGGGACAGTGGTGGCCCAAACAGAACAAGAGGTTTCTACTCTTCCACCACTGTCTCAGTACCAAGTGAAGTTGTTCTGTCTGCTGTACACCCAGCTGATAGTGAAGAGTCTGGTGTACTGCTGTGGACTCTCTCTGCTGATGATCCTCAGAAACAAGGGACCGTCCACCAGCTGCACACATGCTGACTGACTGTTTTCTGTGTGCTGCAGCTTTGTCAATTTTTCAGTATAACATTCTTTG

Function

NR:

description
PREDICTED: uncharacterized protein LOC102295145

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150598 True 1741 TUCP 0.49 5 3511653 3525049
TU150599 False 1076 TUCP 0.52 4 3500679 3525049
XM_039815754.1 False 1099 mRNA 0.50 5 3511629 3525115

Neighbor

gene id symbol gene type direction distance location
ptmab NA coding upstream 196453 3298864 ~ 3304226 (+)
LOC120568826 LOC106675582 coding upstream 766781 2732606 ~ 2733898 (+)
nmnat2 nmnat2 coding upstream 811463 2665824 ~ 2689216 (+)
LOC120568517 NA coding upstream 1035839 2463673 ~ 2464840 (+)
LOC120567899 NA coding upstream 1278788 2221448 ~ 2221891 (+)
LOC120568524 NA coding downstream 71300 3596415 ~ 3600572 (+)
LOC120568326 NA coding downstream 190451 3715566 ~ 3715955 (+)
LOC120568529 NA coding downstream 278783 3803898 ~ 3807690 (+)
LOC120568332 NA coding downstream 290705 3815820 ~ 3825434 (+)
vcpip1 vcpip1,LOC102795816 coding downstream 411516 3936631 ~ 3949566 (+)
G111749 NA non-coding upstream 7585 3492873 ~ 3493094 (+)
G111744 NA non-coding upstream 13472 3486855 ~ 3487207 (+)
G111735 NA non-coding upstream 44126 3455649 ~ 3456553 (+)
G111733 NA non-coding upstream 46910 3452971 ~ 3453769 (+)
G111732 NA non-coding upstream 47780 3452171 ~ 3452899 (+)
G111768 NA non-coding downstream 42857 3567972 ~ 3633295 (+)
LOC120568340 NA non-coding downstream 43618 3568733 ~ 3575838 (+)
G111779 NA non-coding downstream 130704 3655819 ~ 3658871 (+)
G111785 NA non-coding downstream 218862 3743977 ~ 3829859 (+)
G111789 NA non-coding downstream 266877 3791992 ~ 3841959 (+)
LOC120567769 LOC102296991,LOC102211951,LOC102799200,LOC101465856 other upstream 101496 3388054 ~ 3399183 (+)
G111494 NA other upstream 424778 3016958 ~ 3075901 (+)
G111484 NA other upstream 434650 2931639 ~ 3066029 (+)
G111486 LOC107102160,LOC102799505,LOC103352980 other upstream 559831 2938149 ~ 2940848 (+)
G111452 NA other upstream 676091 2816944 ~ 2824588 (+)
LOC120568521 NA other downstream 15872 3540987 ~ 3852034 (+)
G111848 NA other downstream 563529 4088644 ~ 4137543 (+)
G111850 LOC102799398 other downstream 565393 4090508 ~ 4138933 (+)
tmeff1a tmeff1,LOC102775778 other downstream 687009 4212124 ~ 4326186 (+)
dnaaf11 NA other downstream 973879 4498994 ~ 4592347 (+)

Expression


Co-expression Network