LOC120568336 (LOC106921407,LOC102295145)


Basic Information

Item Value
gene id LOC120568336
gene name LOC106921407,LOC102295145
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3795799 ~ 3798340 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU150645
GGCTGATGGGAGATGTGAGGAGCTGTTAGAAACCACGTGGCCCTCGTCTGATCTCACAGCTCGTCCTTGTTTGGCCTCAGCTGCATCAGAGCGCCACTTCTCCCCAGGTTCACCAGAGGAAACACCACTGAACTAAATGCTTttcctcccagctgctgctctgtgctgtctgtgttcAGCGCTGGCTGCCATGGCAACACAGCTGATTCAGGATGATTTAACATTGACCAGGAGAGTTGGTGGAGACGTCTCCTTCAGCTGTCGAGGCACTGAGCAGTGTGACAGTAATTATATATACTGGTACcagaagagagac
>XR_005640701.1
GCAGCCTTATCTGTCTGCTGCAGGGGCTGATGGGAGATGTGAGGAGCTGTTAGAAACCACGTGGCCCTCGTCTGATCTCACAGCTCGTCCTTGTTTGGCCTCAGCTGCATCAGAGCGCCACTTCTCCCCAGGTTCACCAGAGGAAACACCACTGAACTAAATGCTTttcctcccagctgctgctctgtgctgtctgtgttcAGCGCTGGCTGCCATGGCAACACAGCTGATTCAGGATGATTTAACATTGACCAGGAGAGTTGGTGGAGACGTCTCCTTCAGCTGTCGAGGCACTGAGCAGTGTGACAGTGTTCCTGATTTCTGATTGAGGGGGGCCCCTCCCCTGGATATAAGAGAGGCTGGGAGACAGAAATCTGTCTCTGAGACTGAAGCAGCTGATCACCGTtggtttctcttctcttcttttggGTTTCTTTGCTTTGAGGATGGAGGtctgaggcccgttccagaaagcaggtttagtgaaaactctgagttggttaaccctgagatgagggaaactctg

Function

NR:

description
PREDICTED: uncharacterized protein LOC106921407

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU150645 False 316 lncRNA 0.52 2 3795823 3796232
XR_005640701.1 True 526 lncRNA 0.52 3 3795799 3798340

Neighbor

gene id symbol gene type direction distance location
LOC120568326 NA coding upstream 79844 3715566 ~ 3715955 (+)
LOC120568524 NA coding upstream 195227 3596415 ~ 3600572 (+)
ptmab NA coding upstream 491573 3298864 ~ 3304226 (+)
LOC120568826 LOC106675582 coding upstream 1061901 2732606 ~ 2733898 (+)
nmnat2 nmnat2 coding upstream 1106583 2665824 ~ 2689216 (+)
LOC120568529 NA coding downstream 5558 3803898 ~ 3807690 (+)
LOC120568332 NA coding downstream 17480 3815820 ~ 3825434 (+)
vcpip1 vcpip1,LOC102795816 coding downstream 138291 3936631 ~ 3949566 (+)
dusp28 dusp28,LOC102795231 coding downstream 161252 3959592 ~ 3964053 (+)
LOC120568531 NA coding downstream 188105 3986445 ~ 3992589 (+)
G111779 NA non-coding upstream 136928 3655819 ~ 3658871 (+)
G111768 NA non-coding upstream 162504 3567972 ~ 3633295 (+)
G111765 NA non-coding upstream 201692 3519142 ~ 3594107 (+)
G111792 NA non-coding downstream 1462 3799802 ~ 3800698 (+)
G111819 NA non-coding downstream 152604 3950944 ~ 3957274 (+)
G111821 NA non-coding downstream 155688 3954028 ~ 4018396 (+)
G111832 LOC102198835,LOC101471160,LOC102289605,LOC100700585,LOC102794384,LOC101068328 non-coding downstream 203674 4002014 ~ 4010693 (+)
G111844 NA non-coding downstream 286762 4085102 ~ 4087986 (+)
LOC120568327 LOC102295145 other upstream 270684 3500679 ~ 3525115 (+)
LOC120568331 NA other upstream 289671 3491589 ~ 3506128 (+)
LOC120567769 LOC102296991,LOC102211951,LOC102799200,LOC101465856 other upstream 396616 3388054 ~ 3399183 (+)
G111494 NA other upstream 719898 3016958 ~ 3075901 (+)
G111486 LOC107102160,LOC102799505,LOC103352980 other upstream 854951 2938149 ~ 2940848 (+)
G111848 NA other downstream 290304 4088644 ~ 4137543 (+)
G111850 LOC102799398 other downstream 292168 4090508 ~ 4138933 (+)
tmeff1a tmeff1,LOC102775778 other downstream 413784 4212124 ~ 4326186 (+)
dnaaf11 NA other downstream 700654 4498994 ~ 4592347 (+)
G111910 NA other downstream 747085 4545425 ~ 4546082 (+)

Expression


Co-expression Network