LOC120568335


Basic Information

Item Value
gene id LOC120568335
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3800195 ~ 3821190 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU150892
CTCTGATATTGTTTGCTGtggatttaatttattatattttgctgtGGACAATTTATCTTTTCCCTCTTTCACGAACTGCAACAACAAACACTAATTGACCCACCTGTAGAACCCCGTTCACATCAGCGATCTGATTGGCCAGCTGATCAGACCACTCCCTATTAAAGGAGGCTAGACCTCTTACTGAGGGGGACAACGCTCTGGACGGATAGACCGGCTGTGTCCTGCAGCGGCCTGGCTTGCTGATCTTCTTCTCCCTCGGTGTTGCTGCTGACTGGATCTCCTGTACCCTGGTGGAGCTGAATCCCAGACTCTGCAGTGAAGTGGTCCTTTTCTCCCACACTGATGCGTGGGTATGTTTTAGCATTTGAGCTAAAGGAGTCGTTTTTACTAGTTGTTCATTCCTGTGAAGGTGCCAGATCCTGGGGCCGACGGCAGAGCAGCAGACACGGCAGTATTGTTGATGAGCCCACTTGAAGTAGAGGAAAGGAAAGCTGTCATTCTAGTCACCCGAGACTGGTTTAAAGTTGCCGGGCTACG
>XR_005640699.1
AGCCTGTAGTCTGTGAGTGGTATTAACCTGTTGGCTTAATGTCCATAGTggaataagctagctagctacaggctagtgctagcctacatttaatcaccatttAATCAGTGCAGGGAAACGTTTAGCAAGATGTTCATATTAAATCATTGTCCCTGCCCCTTTTAGCAGCCTTAACAACAGATGAGTCAGCAGCAGCCCAGTCTCCCCCTAACTGAGCCCCTCCCTGTCCCAGTGAAGAAGtgacgtccctgGAATCGGCTATCCAAAGCCCCGCTGAAGCAGATATTCTGTGCCGGCGCCAGGAGAAACACGGAGCTGACTCCAGGCTGGACTGGACTTGGTTGTCGTTTCACCCTGGGACAGAATATTGGACAATCCATGGTTCTATTGTCTCCCCTGGTTTTTGAGGAGATTGTGATTTTAATGTCAGTTTAAACTtaacttttaaaatattaa
>XR_005640700.1
TAGACCGGCTGTGTCCTGCAGCGGCCTGGCTTGCTGATCTTCTTCTCCCTCGGTGTTGCTGCTGACTGGATCTCCTGTACCCTGGTGGAGCTGAATCCCAGACTCTGCAGTGAAGTGGTCCTTTTCTCCCACACTGATGCGTGGCAGCCTTAACAACAGATGAGTCAGCAGCAGCCCAGTCTCCCCCTAACTGAGCCCCTCCCTGTCCCAGTGAAGAAGtgacgtccctgGAATCGGCTATCCAAAGCCCCGCTGAAGCAGATATTCTGTGCCGGCGCCAGGAGAAACACGGAGCTGACTCCAGGCTGGACTGGACTTGGTTGTCGTTTCACCCTGGGACAGAATATTGGACAATCCATGGTTCTATTGTCTCCCCTGGTTTTTGAGGAGATTGTGATTTTAATGTCAGTTTAAACTtaacttttaaaatattaa

Function

GO: NA

KEGG:

id description
ko04145 Phagosome
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
TU150892 True 540 lncRNA 0.49 2 3803176 3821190
XR_005640699.1 False 456 lncRNA 0.46 2 3800195 3802495
XR_005640700.1 False 435 lncRNA 0.52 3 3800195 3803506

Neighbor

gene id symbol gene type direction distance location
LOC120568321 NA coding downstream 39528 3749457 ~ 3760667 (-)
LOC120568526 NA coding downstream 49055 3747297 ~ 3751140 (-)
LOC120568323 NA coding downstream 94025 3671550 ~ 3706170 (-)
LOC120568006 NA coding downstream 545826 3234368 ~ 3254369 (-)
LOC120568004 NA coding downstream 599342 3183582 ~ 3200853 (-)
LOC120568324 NA coding upstream 40139 3861329 ~ 3871815 (-)
LOC120568530 NA coding upstream 62566 3883756 ~ 3889916 (-)
proca NA coding upstream 151142 3972332 ~ 3983995 (-)
saga LOC100700585,LOC102198835,LOC102289605,LOC101471160,LOC103367699,LOC102794384 coding upstream 180251 4001441 ~ 4018262 (-)
cldn15la LOC104937175,LOC107383743,LOC108229378 coding upstream 199977 4021167 ~ 4027586 (-)
G111946 NA non-coding downstream 75313 3659776 ~ 3724882 (-)
LOC120568342 NA non-coding downstream 79073 3718266 ~ 3721122 (-)
G111960 NA non-coding downstream 98395 3675497 ~ 3701800 (-)
G111935 NA non-coding downstream 107693 3495593 ~ 3692502 (-)
G111997 NA non-coding upstream 146804 3967994 ~ 3969218 (-)
G112007 NA non-coding upstream 218694 4039884 ~ 4040197 (-)
LOC120567799 NA non-coding upstream 253539 4074729 ~ 4082082 (-)
G112018 LOC102799398 non-coding upstream 269318 4090508 ~ 4138931 (-)
G112019 NA non-coding upstream 271375 4092565 ~ 4140920 (-)
LOC120568325 NA other downstream 166796 3629565 ~ 3633399 (-)
LOC120568522 NA other downstream 214669 3564546 ~ 3585526 (-)
LOC120569104 NA other downstream 343661 3445400 ~ 3456534 (-)
LOC120568520 LOC101465856,LOC102211951,LOC102296991,LOC100703857,LOC103352978,LOC102799200 other downstream 428420 3314646 ~ 3371775 (-)
LOC120568005 NA other downstream 571048 3204287 ~ 3229147 (-)
G112043 NA other upstream 416912 4238102 ~ 4238670 (-)
G112046 NA other upstream 446348 4267538 ~ 4284083 (-)
G112233 NA other upstream 1842814 5664004 ~ 5668687 (-)
LOC120568546 NA other upstream 1902543 5723733 ~ 5746081 (-)
G112328 NA other upstream 1971973 5793163 ~ 5852447 (-)

Expression


Co-expression Network