LOC120568048


Basic Information

Item Value
gene id LOC120568048
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 5893923 ~ 5898411 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU151353
CCTTGCCAGGGTTTTGCTGTTTGAAAGCCGATGTCTCCTGGATGAAGAGGTTGAGGGAGTCGCTGAGCTGAGGTCCAGTCCCAGATGGGCTGTCCTGGCCTGAGTCAATGATCTCCCAGCTACAAGAAAGTAAGGACAGAAGCAATGTTAGTCAATTTTAATGTAATTCACGTTGACAGTGTATTCTGCCACTACACAGGTGGAAAGTTGTCTGACTGGCTTTGTTTAATAATGAAGAAAAACTTGCTCTAACCTTATTCAAGTAGTTTTTATCACCTAAACTTGAAACAATGTGCTGCTGGTCTGGCTTTGTTTGACCAGTAAGGGCACTGGAATCACTCTTAAAGTTAGTTTGGGGAAATATATCTTGAaactttgtacagcactttctGCTGGCATTGTctttaaatgtgctttacagATAAAGTTATTTGACTTGTTGGTACGTGTAGATGGTCAGCATGTCGTTACTGATATGCAATGACTCTGCATTAAAAATAGTATCAGCATTTGACCTAACCAAGAAAGGGATTGAAGAGGTTTATTTGAAGGCTTAGAATTCTACTGGTTGAGGGTCATTGATGAAATTTAGTCCAAGAAAATAACCAGTCCAATGCAAATGTCATAGTCTAAATTAAGAAGCCTCCAATACAACTGGCTAGATGACTAAACAGACATGTGGCAGATGGGAATAgaaatgtaaaagtgctttcCATGCTGTGGTACTGTTGAGAATTCTAGGCCATCTGGTAAGGTATGAAACTTTACCCTCCACATCGAGGGTTCCCACAAAGCATCTCCTGTTTAAGCTCTACTATCAGCCCTCGTCCTCACTTCACATAAAACAGCTATAAAAGGCACATATGTGGCTCATCTGTAGGTCATGTGCGATAAATAGATAAGGGTGTGAGGCAGCCAAAGTCCTGCTTCAGCTTTTGTTTCACTGGCTTCACTAGCAATGAGTTTTGCCATTGCTGGTTTCCTAAAAGGTAAAGGTATGTTCTACTATGCTGGGCGgtcacaaagacaaaacagatATACATTGTTAGCATTCAAGAACAACatattactttgttttttaaGCATACCAATGGCTGAAGTCAAATTTCCACTGTGGTTCAGATCAAATTATTCAAACATTGTACTTTAACCGGGGCAAGGTCAACAGCTTTTATCAGATTAAATGACAATATACTAAATTTAAATCCAACAGAGGATGGAAACATGTCATGTGAAAGCAGCTGTCCTGGAAACAGCTGGTGTGAAATCACCATGCAGATCTAGTTACCATAACAGCTAAGCAGTTAATACAGCTGTGGGGTTGCTGTGCTAATTGGAAAATATGTGACCGTGGTCTTAAAAGGGGATATTCATTTCTATAAGAAACGGTACTTTACGTTCCAAGAGTTGTCCACTATTTCGACCTTAGGCCTTGCATACCAATCATCTTTCATTAATAAATTGTTCAACATATCTAGTTGATGGTGTGGTCCTTGCAGGTGAAAACCACAGATGTCAATCTCAGTCAAGTCAATCAATCACCAAAGTGATTAGTACATCCTCTGGGAACCCTAAATGTCGGTACATTATTTTGTGCCAATTGAATTAATAGATGTTGAGTTATTTCACTGGAtaagtaaacattttaacctGCTGGTGGCAATAGATGAAGAGTCAgaagatcaccaaagtcattacaaTTCATACTCTGAGGACAATGAATGTGGTTACCAAATTTTGGggcatccaatagttgttgagatatttgtcCAATATTTGATATTTGGCTCAAGCTGGACAAACATATAAGGctgacaaacataaaatattgCTATCCCTAAAAAGCCACACTgtagtaacatttttatttcaactcAAAACACTGGCTACTAGCTTCAACCCGAAAAACACTTGTATAGTTTGTAATGGTTTTGACAACCCTACATCAGTTTAACCATATTGGTTGCTAAAGGAGACAAACTAAACCCACAAGTCCTTCCATTTTTTTCTTGAACCCTATTACCCTTTCTGACCCCTTTAATCCCATCCAAAACCTCCCTTCCCCCAATCATGTATTTGCTAGGTTGCAAGGAACAAGCACGAGAGGCCACAAGAAGCGACAACTCAAACACTCAGGCTTGTCTCAGATAACCCAGATTATCCCGTCTCGACTTTCAGGCGCATGCATCAGGAGGCTGATTTCCAGGGAAATATGATGGGTTGAACATGTGACACTGATTCTTGGAAAGTATCGTAAAGTTTCACCACACCACAGATCGCCTGGAGAGtggaaATCACACACAACTCCAGCCATACCTCAGTCCTGCCCCACGCTCTTCAGGAGACATCTCAGGTAACTTCAGGTACCTTCAGAAGATTTGACAATGCAGCCAAATGCTGGATAGTCAAGATAGAGACAGATAGAATTTGTCTTtgcagtagaaaaaaaaaactgccggCACAAACTCAGGGTTGAGCCAAACTCAGGTTTTACGTGCCACACAGCGCGAGAGCAGTTTGTGTTTATACTCAATGAAGCTCCGGCTGGAGTATTTCAAACGGCCTTGTCTAAAAATAACCCGGTCACACTACATTCCAACTGGTAGCCATCAGGGGGACAGAGGGATggggttgggggtt
>XR_005640654.1
CCATATTGGTTGCTAAAGGAGACAAACTAAACCCACAAGTCCTTCCATTTTTTTCTTGAACCCTATTACCCTTTCTGACCCCTTTAATCCCATCCAAAACCTCCCTTCCCCCAATCATGTATTTGCTAGGTTGCAAGGAACAAGCACGAGAGGCCACAAGAAGCGACAACTCAAACACTCAGGCTTGTCTCAGATAACCCAGATTATCCCGTCTCGACTTTCAGGCGCATGCATCAGGAGGCTGATTTCCAGGGAAATATGATGGGTTGAACATGTGACACTGATTCTTGGAAAGTATCGTAAAGTTTCACCACACCACAGATCGCCTGGAGAGtggaaATCACACACAACTCCAGCCATACCTCAGTCCTGCCCCACGCTCTTCAGGAGACATCTCAGGTAACTTCAGGTACCTTCAGAAGATTTGACAATGCAGCCAAATGCTGGATAGTCAAGATAGAGACAGATAGAATTTGTCTTtgcagta

Function

GO: NA

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU151353 True 2640 lncRNA 0.41 2 5893923 5898411
XR_005640654.1 False 487 lncRNA 0.46 2 5895877 5898212

Neighbor

gene id symbol gene type direction distance location
myo10 myo10 coding upstream 225206 5501683 ~ 5668717 (+)
LOC120568538 NA coding upstream 485302 5404453 ~ 5408621 (+)
adcy8 adcy8 coding upstream 557431 5199093 ~ 5336492 (+)
oc90 NA coding upstream 1005711 4837464 ~ 4888212 (+)
LOC120567839 hhla1 coding upstream 1058870 4805564 ~ 4835053 (+)
rnf182 NA coding downstream 18738 5917149 ~ 5924931 (+)
ranbp9 ranbp9 coding downstream 38898 5937309 ~ 5971411 (+)
LOC120568054 NA coding downstream 132542 6030953 ~ 6053260 (+)
LOC120568059 NA coding downstream 157347 6055758 ~ 6057484 (+)
stard3nl stard3nl coding downstream 186318 6084729 ~ 6105817 (+)
G112252 NA non-coding upstream 173283 5719421 ~ 5720640 (+)
G112246 NA non-coding upstream 187040 5705631 ~ 5706883 (+)
G112237 NA non-coding upstream 194369 5699334 ~ 5699554 (+)
G112217 NA non-coding upstream 407330 5421031 ~ 5486593 (+)
LOC120567911 NA non-coding upstream 481703 5409951 ~ 5412220 (+)
G112282 NA non-coding downstream 27467 5925878 ~ 5928002 (+)
G112283 NA non-coding downstream 28263 5926674 ~ 5928936 (+)
G112286 NA non-coding downstream 68642 5967053 ~ 6011802 (+)
G112301 NA non-coding downstream 162547 6060958 ~ 6070370 (+)
G112302 NA non-coding downstream 164392 6062803 ~ 6070610 (+)
LOC120568547 LOC106674584,LOC106676354,LOC106675207,LOC106675343,LOC106676464,LOC106676424,LOC106675739 other upstream 104506 5788223 ~ 5789417 (+)
dnaaf11 NA other upstream 1301576 4498994 ~ 4592347 (+)
G111910 NA other upstream 1347841 4545425 ~ 4546082 (+)
tmeff1a tmeff1,LOC102775778 other upstream 1567737 4212124 ~ 4326186 (+)
G111850 LOC102799398 other upstream 1754990 4090508 ~ 4138933 (+)
epdr1 epdr1,LOC104965688 other downstream 85446 5983857 ~ 5993711 (+)
LOC120568055 NA other downstream 105274 6003685 ~ 6016600 (+)
G112400 NA other downstream 352979 6251390 ~ 6321990 (+)
LOC120568552 dip2c other downstream 676385 6574796 ~ 6682272 (+)
G112562 NA other downstream 842690 6741101 ~ 6770912 (+)

Expression


Co-expression Network