G112648 (LOC106604074)


Basic Information

Item Value
gene id G112648
gene name LOC106604074
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6995058 ~ 6998925 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU151885
ATTTATCTATCACATTTGGTCTAGCTAACATTAAACATGACCAAAATACCAGTTCAATCATTATGTGGTGGCCAATGTGGATATTGAAACACTGCGAGCTGTATATGCGTGTGACATTACCTGTTGTGACCGTCATCCTTCTCCATCAGGGTGGGATGTGGCCTAAACACCAGTTCTATTTCGCTGGCACCGCCATCGATCACAGAGTCCCCGCCCCCATTCTCCGCAGCGTTGTCCATGTCTAGACCGCTGTCATCACTCGTCTTGGTGCGCTTAATGCTCGGACCTGCCTCCTGGTTGCTGTGGACAGACGCGTTGCTACAGTGGGAGGAGTCTCCGTTGTCCTCAGCTCCGCTACCATTCTCCACTGTGTGTCTCTTACCGCGCTGCAGTCTGGTCATAGCCTGTATCTTCAGCCCCTCCTCTATGCTGTGGGACAGGGCTTGCTGGTTGTTGTGTTTGCTAATGCGAGCCAACACTCGCTCTTGGTGGGCTTCGTACTCGTCTCGGCTGGGATAAATCTTGCCTGAAACGGGATAAGTTAATAAGAGACTAAATGCGAGAATATTTTGAACACAGCGTTTTGACTCACAATTTTCAGTCAATCCAGATTGTTTTGTGTAGTGATTAGACCTACTTTAACCTTCTTGTAGTCACTTACTAATCAGAGCGTCAAAATTAGGGTCTGGACGCAACGACCTCTTGGACACCAGCTTCTTACGACAGGTAGGACACTCTTTATTACTGCAAAGACAGGGAGGACACACATTTTGAAACTTGAAATTCAGTttttatcagatttttttttactgtacgtTGATTGTTCAAGAAGGACCATTTTAAGAGATACATGAAAAAGTGTGAACCTACCCTTTAAACGATAATGCTGTATCAAACAGgtcattttagtttgtttgtgctCCAGTATATCACCATCACCTTGAGACTTTGAGCGACATTAGCTTCCACCATTAGCGATCGAATAAAATAGGGACCAGATTTCTCCTGTCCgagggcgctttcacacctgcctcgttTAGTCCGGTCGGGTGCGCgccaaaagcggaccaaacaagcgtaccgagacctgccTGAAGAGGTGGTCTCGTTACGCTTTCAATccaactctggagcggttcgtttgtggtgagaaagGGATCCGACTATACATACTCCACAAGTCAAACCAGCTGCCGCTAAAATTGGGGTAGAGCAAAGTCTCGGTAaccagagcagacgtagtaacGTCTCTCCCGAAACAATGTCTGATCATTTTAATGGAATGAGCTGGTTTGAACgtggagatgcaagaaatatgcactagtccagaaccttttttctgtatttactttcttgctcccgcccccagacacatccgaccaataagaggagtgGACGTTCTTGCGTGATCTGTAAGTGATTGTAgcgcattttggtacgcttggatttttcaaggtgtgaaaccaaaccaaaccgagGGCAAATCGCTCCAAGTCTACAAACtcaccaactgattcggaccaaatcaaacaaactacaggtgtgaaaaggcCCTGACTGTGGAG

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RING2-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151885 True 1565 lncRNA 0.46 3 6995058 6998925

Neighbor

gene id symbol gene type direction distance location
LOC120568496 vipr2,LOC107383421,LOC102775707 coding downstream 127400 6803908 ~ 6867658 (-)
LOC120568072 NA coding downstream 219365 6773520 ~ 6775693 (-)
LOC120568070 NA coding downstream 226160 6765048 ~ 6768898 (-)
LOC120568067 NA coding downstream 231008 6761022 ~ 6764050 (-)
LOC120568073 NA coding downstream 234922 6757854 ~ 6760136 (-)
LOC120568998 LOC103370293,LOC103129992,LOC103396629 coding upstream 9196 7008121 ~ 7015870 (-)
LOC120568987 LOC104934800,LOC103132244,LOC103479200,LOC103375024 coding upstream 19469 7018394 ~ 7028668 (-)
c11h5orf22 LOC104934799,LOC103375412 coding upstream 31160 7030085 ~ 7044538 (-)
LOC120568977 NA coding upstream 231876 7230801 ~ 7232421 (-)
LOC120567743 NA coding upstream 623189 7622114 ~ 7624108 (-)
G112617 NA non-coding downstream 45926 6874665 ~ 6949132 (-)
G112579 NA non-coding downstream 125588 6731759 ~ 6869470 (-)
G112581 NA non-coding downstream 260078 6690670 ~ 6734980 (-)
G112590 NA non-coding downstream 268291 6726411 ~ 6726767 (-)
G112578 NA non-coding downstream 299557 6691784 ~ 6695501 (-)
G112652 NA non-coding upstream 5239 7004164 ~ 7005382 (-)
G112654 NA non-coding upstream 7747 7006672 ~ 7006980 (-)
G112683 NA non-coding upstream 59522 7058447 ~ 7058835 (-)
G112716 NA non-coding upstream 609975 7608900 ~ 7610234 (-)
G112738 NA non-coding upstream 711685 7710610 ~ 7734376 (-)
si:ch211-267e7.3 LOC103370300 other downstream 4936 6956440 ~ 6990122 (-)
zmynd11 zmynd11 other downstream 258546 6695610 ~ 6736512 (-)
LOC120567959 NA other downstream 816172 6172281 ~ 6178886 (-)
G112328 NA other downstream 1142611 5793163 ~ 5852447 (-)
LOC120568546 NA other downstream 1248977 5723733 ~ 5746081 (-)
cdh6 LOC103366829,LOC104926815 other upstream 77684 7076609 ~ 7163670 (-)
trnak-uuu_16 NA other upstream 1488542 8487467 ~ 8487539 (-)
G113070 NA other upstream 1781527 8780452 ~ 8790042 (-)
chd7 chd7,LOC103370133,LOC102782711 other upstream 2115459 9114384 ~ 9194872 (-)
LOC120568397 NA other upstream 2401862 9400787 ~ 9510497 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011729 NA non-coding NC_007128.7 CM002901.2 48897360 ~ 48904022 (+)
mexican tetra (Astyanax mexicanus) LOC103027657 LOC108430978 misc NC_035904.1 CM008307.1 7551185 ~ 7590554 (-)