LOC120568255


Basic Information

Item Value
gene id LOC120568255
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8393511 ~ 8399327 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU152287
GTTGGCGTTTTTCGAATGCGCGCATGCGCCATGTGACGCGCAAACAGGACGCATGCGCTTCGTTGTCCGCCAAAACACAAGAAGACGACGATGGAGTTCAGGTTAAATGGAGACAGGAGCAGCTAAATCATCTTAAAGCCCCAATgcaacaactttaaatttgacAGAGTGCCCTCTCAAGCAGCCACAACAGCAAGCTGTGTCACAAGCAAAGCTGGCAAttcagCCTCCACCGGAAAAGTTCTCCTGCTACAGCATTTGATTTGAATGGCTAATGTAAGAATATCAGCAGAGAGGAAGCTCAAAAGGACCAGGCTGAGCAAGTCCTAAGGATCTGTGTCTTCCACACAAGTGAAGAAGATGAAGTTGCATCCGAAACTGATGTCGATTGTTATTGAAGGGCATGAGGTACTTGACAACTGTGGAAGTGTTGCAAAAGACTGTCTCCTGCTCGTAGGCATCATTTATGCCATGAACTTGAAAAACGAAGTACACTTTTGAAAATTTTAAAAGCTAAACAAAACTTATAACTTGAATGCACATGTTTGACCCATGAGTTGTCATTTCAAAGAGGGcgctaaaagaaaaatatggCACAGTTGTTTATGTGGCTATTTgtctattttcttatttttctctcGTTTTAATgatgtagtttttattttaacttgttGCACTGTATTAAACATGTGGCCATGTAGAGTGGCTAAGTTGTggggacaaaagaaaagaagttaGATCAGCATTTTCAAGTCAAACCAGAGGTTCTCAACTGGTGGGTCGTGGGGCCATTTTCAATGGGTCACAGATGTGAGGTGGGCATGTAAAGTGCAAGGGGCAAAATATCCCACTTTTTATTGTTAAGATGCTCTGCTTTTTGTAGGATATTACTCATGATACATGTTTAGAACCTCAGGGCAAAACACTGTTCTTTAAGATGCAATGTTTAAAGATGAAACCAATAATAAGCATGTCTTTTAAGATGCACTGAAGGTTCCTGAAGcatgtcaatattttttttagagAGTTTAAGGTTAAAAAGCCTATCCAAAAGATAGGTTACCGTACGTACTGTACGGTACGTActgttgggcatcgagaaccgattcctaatcggaatcgtttcaaaaattacgattccatcagaatcgtttctttattggaatcgtttggaggatttggtttcaaatctgatcataggttccaaatttaatatgcgcaagttttggtttccgtagcagccaggcgcttgttgtgttgcagccgtgcagcacagtaagcggagctctagtgtggctttattttgcgttgtaaaactgcaacccacctatgaatcaaaataaaactttcctcttatttgtgaaataagcatctaacccgtttcaactccaccactcaaagaatctgaatcgagaatcgataagaaccggaatcgaaaggaagaatcggaattggaatcagaatcgttaaaatccaaacgatgcccatccctaaTGCCAACAGTTCCTGAACTTTTCCTTGTGCCTTTAACAAGCTACCTCAAACCTATTTTAGCCACACTAAGATGAAATTTCTGTCATCTACTCACCCTGATGCCAATAGGACTGAATTTTGGTCAACATTCATGCTCTTCTCTCATGTTTGTTTCTCACAAAACTGCAGTGAACATCAACTTGTCTTCAAACATCCAAAAAATGTCATGAATCAAAAACATGTCTTCATACTGCTCATCTGAAGTAACCCAAGTGTCCTGCATCTTACACATTCCTAgatgtttacaaaaaaaaccataacaaaattgtgttttggcTGCGTTTGCTATGCTTTGCTTCCTCTGTGGTGCTAGGTGAACACGGACGGGCTGGCTGGAAGTTAATAGTGTGGAAGTTTGCGTGTGGCGTTGGAAGGGGCACGCATGGGAAGAGCAGCAGAGCAAACAAAGTTGAAAACacatttgtaatgttttttaCAAACGTCTTGGCATGTGTGAGCTACAGGACACTTGGATTACCTCAGATGAGCAGTATGGAGACATTTTATTGATTATTGATGTAATTTGGATGACTCACTGCAGTTGAACGGAAAACGCGTCTCTCAAACGCGCAGAAGAACACTGATGTTAACTTGTTTTTGACAAAGGCGTGACTAGATAACAAAATTCATTTTAGGTTGAACTATACCTTGTTGTTTTGCCATGCAAACTTGCTGGAAAATGtttcattgaaaaaaatatttctttaaataaatggGTTAAGTTAAAGTTTTAAGTCATTGTTTCAATAAACAATCATTAAGAACACATTTAGCCAATTTAAACTGcagaaaaaatatgtaaaatgttgtgtaaattttACTTAAATATAGTCCATAAATAAGTtagaaaaagtatttaaaaattaCCTTGAAAAGCCATTGGTTTTAGGTGAGATTTTTCAGTTTGAAGCAGTCAGAGGATAAGTAAAACTTACAAAGAATGAGAGAGTAAAATTCAATAACAATATCAATAAACATCAGTAAATTACTTGAGGTTTGCGAGTAAAAGAAACTTATATCTGCAAGTAAAGTTTACTTGATGATTGCCCTTGTAGAATTTACTTACAATTTCTAAGTGCAAAAACTTTCCTAGGTTTTCCCAAGTAAATAACACtcaacatttttttcagtgcagtaacacaacaaacacatatacacacatatatcacacatacataagaataaaaataaaaatcacgcacagaaatgcaatgaccatgataaggtCTGTGCAATGACCATgatctgtgcatgtgaacaatctgacgaattttctacaatttgaactattttagtattatgatacagcatactaaagatgagagtgcttttcattatgtacaacagtgtgtagttggttagacaaatctggtaatatgaatgaagaGTGTGCCATGTGGTGCAAGGTCCAGCTAGGTGTAGAGATAATGtctagttgttgtttttttctatttttttttttgtgattgcaagttaacctgtactggatactgTATGTTAGgtttgtttgctgagctaacagtgttatgcacactactgtagtagcatgaaaacttgtgattctccatgttgacatgttgactgatttgggtatatgga
>XR_005640692.1
tcacaatttttattttctaattgTAAGTATCAGTGAGAACTGGAATTATTCAAGTAAAACTATATATGTCATTCATGtaataaataaactgtgtgGGAAGAGTAagttttattatgtattttcacATAATATTCAAAGGTTTCATAGTCATTGCACATGAACTTACAAATACCAAGTAAGTTTAAATACTGTTGGCGTTTTTCGAATGCGCGCATGCGCCATGTGACGCGCAAACAGGACGCATGCGCTTCGTTGTCCGCCAAAACACAAGAAGACGACGATGGAGTTCAGGTTAAATGGAGACAGGAGCAGCTAAATCATCTTAAAGCCCCAATgcaacaactttaaatttgacAGAGTGCCCTCTCAAGCAGCCACAACAGCAAGCTGTGTCACAAGCAAAGCTGGCAAttcagCCTCCACCGGAAAAGTTCTCCTGCTACAGCATTTGATTTGAATGGCTAATGTAAGAATATCAGCAGAGAGGAAGCTCAAAAGGACCAGGCTGAGCAAGTCCTAAGGATCTGTGTCTTCCACACAAGTGAAGAAGATGAAGTTGCATCCGAAACTGATGTCGATTGTTATTGAAGGGCATGAGGTACTTGACAACTGTGGAAGTGTTGCAAAAGACTGTCTCCTGCTCGTAGGCATCATTTATGCCATGAACTTGAAAAACGAAGTACACTTTTGAAAATTTTAAAAGCTAAACAAAACTTATAACTTGAATGCACATGTTTGACCCATGAGTTGTCATTTCAAAGAGGGcgctaaaagaaaaatatggCACAGTTGTTTATGTGGCTATTTgtctattttcttatttttctctcGTTTTAATgatgtagtttttattttaacttgttGCACTGTATTAAACATGTGGCCATGTAGAGTGGCTAAGTTGTggggacaaaagaaaagaagttaGATCAGCATTTTCAAGTCAAACCAGAGGTTCTCAACTGGTGGGTCGTGGGGCCATTTTCAATGGGTCACAGA
>XR_005640693.1
ATTCAGGGTTTTTTTCCTGCATATGTAACGGAGTTAAAATATAATATGATCCCACTTGCCATTATCACCTATCACGTATCACTGTAGCTTAATTTTACTATGGTCACTAAACACAACGTACCTGTGGACTTGGGTCGTGCACCCTGGGGGTAGCCTACAGCAGTCGGACCTTGCTGTCCCCTTGCCCCAATgcaacaactttaaatttgacAGAGTGCCCTCTCAAGCAGCCACAACAGCAAGCTGTGTCACAAGCAAAGCTGGCAAttcagCCTCCACCGGAAAAGTTCTCCTGCTACAGCATTTGATTTGAATGGCTAATGTAAGAATATCAGCAGAGAGGAAGCTCAAAAGGACCAGGCTGAGCAAGTCCTAAGGATCTGTGTCTTCCACACAAGTGAAGAAGATGAAGTTGCATCCGAAACTGATGTCGATTGTTATTGAAGGGCATGAGGTACTTGACAACTGTGGAAGTGTTGCAAAAGACTGTCTCCTGCTCGTAGGCATCATTTATGCCATGAACTTGAAAAACGAAGTACACTTTTGAAAATTTTAAAAGCTAAACAAAACTTATAACTTGAATGCACATGTTTGACCCATGAGTTGTCATTTCAAAGAGGGcgctaaaagaaaaatatggCACAGTTGTTTATGTGGCTATTTgtctattttcttatttttctctcGTTTTAATgatgtagtttttattttaacttgttGCACTGTATTAAACATGTGGCCATGTAGAGTGGCTAAGTTGTggggacaaaagaaaagaagttaGATCAGCATTTTCAAGTCAAACCAGAGGTTCTCAACTGGTGGGTCGTGGGGCCATTTTCAATGGGTCACAGA

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU152287 True 3132 lncRNA 0.38 4 8393701 8399327
XR_005640692.1 False 999 lncRNA 0.39 4 8393511 8397004
XR_005640693.1 False 855 lncRNA 0.41 4 8393846 8397004

Neighbor

gene id symbol gene type direction distance location
gad3 LOC104936027,LOC102300090,LOC102207797,LOC101470357,LOC101067284 coding upstream 20073 8348359 ~ 8373438 (+)
tmem68 tmem68 coding upstream 180919 8202224 ~ 8212592 (+)
blvra blvra coding upstream 217557 8164406 ~ 8175954 (+)
cdc14aa LOC104931871,LOC103370748,LOC100703039,LOC108411489 coding upstream 331411 8044004 ~ 8062100 (+)
LOC120567733 en2,LOC103370758,LOC106578606 coding upstream 594020 7792663 ~ 7799491 (+)
LOC120568256 NA coding downstream 120840 8520167 ~ 8528904 (+)
ptf1a ptf1a coding downstream 141054 8540381 ~ 8541623 (+)
LOC120568645 LOC101470953,LOC103363941,LOC107102700,LOC108246684 coding downstream 197059 8596386 ~ 8621676 (+)
fam110b fam110b,LOC102786931 coding downstream 266021 8665348 ~ 8704766 (+)
fam151a LOC107081349 coding downstream 318542 8717869 ~ 8736105 (+)
G112966 LOC103366012,LOC103131821,LOC102230409 non-coding upstream 2020 8389386 ~ 8391491 (+)
G112949 NA non-coding upstream 51528 8341330 ~ 8341983 (+)
G112940 dnajb6,LOC104936025,LOC101470590,LOC102214955,LOC100708567,LOC102785555 non-coding upstream 63224 8326727 ~ 8330287 (+)
G112862 NA non-coding upstream 152092 8239025 ~ 8241419 (+)
G112856 NA non-coding upstream 162435 8223833 ~ 8231076 (+)
G112975 NA non-coding downstream 111763 8511090 ~ 8516736 (+)
G112995 NA non-coding downstream 171139 8570466 ~ 8570735 (+)
G112999 NA non-coding downstream 229245 8628572 ~ 8654614 (+)
G113016 NA non-coding downstream 310990 8710317 ~ 8716540 (+)
G113042 NA non-coding downstream 357554 8756881 ~ 8765533 (+)
G112932 NA other upstream 80435 8309850 ~ 8313076 (+)
dnai4 NA other upstream 489589 7885498 ~ 7903922 (+)
G112670 NA other upstream 1357811 7035027 ~ 7035700 (+)
G112655 NA other upstream 1384354 7007242 ~ 7009157 (+)
LOC120568216 NA other upstream 1444381 6890987 ~ 6949130 (+)
LOC120568257 LOC102194642,LOC101465810,LOC102289180,LOC103366014,LOC103129983,LOC107384349,LOC103396642,LOC108246689 other downstream 7602 8406929 ~ 8510408 (+)
atg10 atg10 other downstream 309334 8708661 ~ 8715271 (+)
LOC120568415 LOC103370799,LOC104931865,LOC101476899,LOC102794599,LOC102300092 other downstream 389882 8789209 ~ 8809459 (+)
LOC120568881 mfsd12,LOC104931866 other downstream 413570 8812897 ~ 8825811 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other downstream 496600 8895927 ~ 8902847 (+)

Expression


Co-expression Network