atg10 (atg10)


Basic Information

Item Value
gene id atg10
gene name atg10
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8708661 ~ 8715271 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU152347
AAAACATTGGTTCTTCAATACCAATACAAATCGTCCGGTCCGGTCCAGCAGTAGTCTCCACCATGTTGCGTTGCAGAGATGAGCGGGTGTGCGCTGGATGAGGAGAACTTCCGGCGCTGCTGTCGGCTCCTCCTGCAGCAGTCGGAGCAGCTGAGGGACGGCTGGAGCTGGGAAGCCGTGCAGGGCTCAGAGGAGGGCTACCTTAAGAAGACTGCTCTCAGATCAGTCGTGGTCGACTCGAGCCCAGCGTGGGACCACGAAGGATCGGCTTCAGACTCGGAGCCACACACTTCCTGTCGCTCCTGGCCTGATCAGCAGGGACAGGAAGAGAAACAGGCTGGTATTGTTCTTTCAGTTGATGCCGACAGCATCAAAGGTGCCATAGAGGATGAGGAAGATGGTGAGGAAGATGAAGAG
>TU152348
AAAACATTGGTTCTTCAATACCAATACAAATCGTCCGGTCCGGTCCAGCAGTAAGATGAGCGGGTGTGCGCTGGATGAGGAGAACTTCCGGCGCTGCTGTCGGCTCCTCCTGCAGCAGTCGGAGCAGCTGAGGGACGGCTGGAGCTGGGAAGCCGTGCAGGGCTCAGAGGAGGGCTACCTTAAGAAGACTGCTCTCAGATCAGTCGTGGTCGACTCGAGCCCAGCGTGGGACCACGAAGGATCGGCTTCAGACTCGGAGCCACACACTTCCTGTCGCTCCTGGCCTGATCAGCAGGGACAGGAAGAGAAACAGGCTGGTATTGTTCTTTCAGTTGATGCCGACAGCATCAAAGGTGCCATAGAGGATGAGGAAGATGGTGAGGAAGATGAAGAG
>TU152352
CTACATCGCCTCAATACAGCATCTCCCCATCAGTTCACTAGGAAAaggagtgtctgtgtttttgaagTATTGAAAATCATACCGTGGAGGGTGAGAAAAGCTGATGTTACAGGTGTTCTAAGTACATTAACATGCCAATATATCCACATCACACCACAGAGCCCTAATGTCCAAAACGATTTATTCCTTTGTACAGACGGCACTTTGCAGCCTGCGCATACAACTGATTATCACTTAAAAGTATACGACCGCCTGCAATATGAGAGGGTCTGTACACCTTTGCATATTTGtcagtgatatttttgctgcATCTTCTTCCTTAATGTATCACCATGTCAGACGGGAGGAGCCTGTCATTAGAGGAGGTGTGGAGCTCTGTTCATCCAAACTTCAGGCTTCGACTTCAGAACAGTCCTCTGAATACAATCACTCTGCAGgaacATCCCCTGCTGGGTCAGCCTTTCTTCATGCTCCACCCCTGTAGAACGGAGGAGTTCATGAGGCCCGTGCTGCAGGCGGCTCAGGACCAACACAGgtcagTGAACTACGTGTTGTCGTGGCTGAGTGTTGTGGGTCCTGTGGTGGGTCTGGACGTCCCTCTGAAGTACGCCACCCAGCTCCATCCTGCAGCGTCACTCAGCAGCACAGAGCCAGACTGAGGCTGCACCTGCTCTGCGTCAACGCTCTCTGTCAGCTTGTCTGTAGGGAGGCTGGATTATCAGCccggtagtctcgcattgccagacctgctGTATCTCCACAGGTCTGTCgggtaaggtctggctacactacAGATACGTTCTGGgataggacaaaaaaaaaagctctggtgtggccaggttggctcagttggtagagcaggcgcacatatacagaggtttactcctagacgcagcggccgcgggttcaactccgacctgcggccctttgctgcatgtcattcacctctctctccccttttcatgtcttcatcttcatctgtactgtggaaataaaggtcttaaaatgccccaaaaaaaactaatcta
>XM_039816927.1
tatgaaACAATAAATAAAGTACAATTAAAATCACAAGTTGGCcaaatagattaaaaaaaaacagagtccCAAGAGGTCATCCAAAGGCATGTTCAAAAAAGTAGATCAGTGAAGTCACAGTGTTCACCACTCCTTGGTTTGCAATAGCCTACTACTGCTAATGTATAACTAGTTAGTTACACTACTGCTACCTTGATGCCTGTGATCTCAGCAGGGGAACAGTAGCTCGGATCCAGTGATAGGACAATATCAACACAGAGCGGCTGTCCTCCTGATGGGTCTGCCTATCATGTCTCCACCATGTTGCGTTGCAGAGATGAGCGGGTGTGCGCTGGATGAGGAGAACTTCCGGCGCTGCTGTCGGCTCCTCCTGCAGCAGTCGGAGCAGCTGAGGGACGGCTGGAGCTGGGAAGCCGTGCAGGGCTCAGAGGAGGGCTACCTTAAGAAGACTGCTCTCAGATCAGTCGTGGTCGACTCGAGCCCAGCGTGGGACCACGAAGGATCGGCTTCAGACTCGGAGCCACACACTTCCTGTCGCTCCTGGCCTGATCAGCAGGGACAGGAAGAGAAACAGGCTGGTATTGTTCTTTCAGTTGATGCCGACAGCATCAAAGGTGCCATAGAGGATGAGGAAGATGGTGAGGAAGATGAAGAGTGTGCAGTATGGGTGAAGACGATGTCGCTGTCTGCACAGGCTGCAGTATAGATCCTTCAGTCCTGCTGCTACAGTACTCACTtgatatttttgctgcATCTTCTTCCTTAATGTATCACCATGTCAGACGGGAGGAGCCTGTCATTAGAGGAGGTGTGGAGCTCTGTTCATCCAAACTTCAGGCTTCGACTTCAGAACAGTCCTCTGAATACAATCACTCTGCAGgaacATCCCCTGCTGGGTCAGCCTTTCTTCATGCTCCACCCCTGTAGAACGGAGGAGTTCATGAGGCCCGTGCTGCAGGCGGCTCAGGACCAACACAGgtcagTGAACTACGTGTTGTCGTGGCTGAGTGTTGTGGGTCCTGTGGTGGGTCTGGACGTCCCTCTGAAGTACGCCACCCAGCTCCATCCTGCAGCGTCACTCAGCAGCACAGAGCCAGACTGAGGCTGCACCTGCTCTGCGTCAACGCTCTCTGTCAGCTTGTCTGTAGGGAGGCTGGATTATCAGCccggtagtctcgcattgccagacctgctGTATCTCCACAGGTCTGTCgggtaaggtctggctacactacAGATACGTTCTGGgataggacaaaaaaaaaagctctggtgtggccaggttggctcagttggtagagcaggcgcacatatacagaggtttactcctagacg

Function

symbol description
atg10 Predicted to enable Atg12 transferase activity. Predicted to be involved in macroautophagy; protein lipidation; and protein modification by small protein conjugation. Orthologous to human ATG10 (autophagy related 10).

NR:

description
ubiquitin-like-conjugating enzyme ATG10, partial

GO: NA

KEGG:

id description
K17888 ATG10L, ATG10; ubiquitin-like-conjugating enzyme ATG10

RNA

RNA id representative length rna type GC content exon number start site end site
TU152347 False 417 TUCP 0.56 4 8709329 8712997
TU152348 False 394 TUCP 0.56 4 8709329 8712997
TU152352 False 1028 TUCP 0.50 3 8713265 8715271
XM_039816927.1 True 1335 mRNA 0.52 7 8708661 8715135

Neighbor

gene id symbol gene type direction distance location
fam110b fam110b,LOC102786931 coding upstream 3895 8665348 ~ 8704766 (+)
LOC120568645 LOC101470953,LOC103363941,LOC107102700,LOC108246684 coding upstream 86985 8596386 ~ 8621676 (+)
ptf1a ptf1a coding upstream 167038 8540381 ~ 8541623 (+)
LOC120568256 NA coding upstream 179757 8520167 ~ 8528904 (+)
gad3 LOC104936027,LOC102300090,LOC102207797,LOC101470357,LOC101067284 coding upstream 335223 8348359 ~ 8373438 (+)
fam151a LOC107081349 coding downstream 2598 8717869 ~ 8736105 (+)
LOC120568389 kifap3,LOC103479309,LOC103146974,LOC104933922,LOC102235632,LOC100693718,LOC102779720,LOC101476805 coding downstream 155470 8870741 ~ 8920465 (+)
trnav-aac_1 NA coding downstream 157341 8872612 ~ 8872684 (+)
trnan-guu NA coding downstream 158423 8873694 ~ 8873767 (+)
trnan-guu_1 NA coding downstream 158701 8873972 ~ 8874045 (+)
G112999 NA non-coding upstream 54047 8628572 ~ 8654614 (+)
G112995 NA non-coding upstream 137926 8570466 ~ 8570735 (+)
G112975 NA non-coding upstream 191925 8511090 ~ 8516736 (+)
LOC120568255 NA non-coding upstream 309334 8393511 ~ 8399327 (+)
G112966 LOC103366012,LOC103131821,LOC102230409 non-coding upstream 317170 8389386 ~ 8391491 (+)
G113042 NA non-coding downstream 41610 8756881 ~ 8765533 (+)
G113050 mrpl37 non-coding downstream 55876 8771147 ~ 8772044 (+)
G113092 NA non-coding downstream 111096 8826367 ~ 8827449 (+)
G113131 NA non-coding downstream 240607 8955878 ~ 8957272 (+)
LOC120568741 NA non-coding downstream 252018 8967289 ~ 8969848 (+)
LOC120568257 LOC102194642,LOC101465810,LOC102289180,LOC103366014,LOC103129983,LOC107384349,LOC103396642,LOC108246689 other upstream 198253 8406929 ~ 8510408 (+)
G112932 NA other upstream 395585 8309850 ~ 8313076 (+)
dnai4 NA other upstream 804739 7885498 ~ 7903922 (+)
G112670 NA other upstream 1672961 7035027 ~ 7035700 (+)
G112655 NA other upstream 1699504 7007242 ~ 7009157 (+)
LOC120568415 LOC103370799,LOC104931865,LOC101476899,LOC102794599,LOC102300092 other downstream 73938 8789209 ~ 8809459 (+)
LOC120568881 mfsd12,LOC104931866 other downstream 97626 8812897 ~ 8825811 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other downstream 180656 8895927 ~ 8902847 (+)
G113130 NA other downstream 229206 8944477 ~ 9002568 (+)
LOC120568835 NA other downstream 2170324 10885595 ~ 10886478 (+)

Expression


Co-expression Network