pdca (LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525)


Basic Information

Item Value
gene id pdca
gene name LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8895927 ~ 8902847 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU152498
GCTTATTCCCTCATCTCTCTccccaccccctctctcctGTCAGTCCTCTAGATGTGGACACACTACTCAGAACATAGATACAACAATAAGACAAAGATTGAAAAAAACGAATAGGCTGTAAGAAACTTGACACACACCAGTTCTCTCTCAAGACCCAAAGACCGCTAGCAAGATGTCTGGCTCTACCCAGGAAGAAGAGGAGTTGCCTGCCAATCACACAGGTCCAAAAGGTGTAATTAATGACTGGCGAAGGTTTAAATTGGACAGTGTGGATCAGACTGTCCCTCAAAGCAAGAGAGAGCTGCTCAGACAAATGTCCAATCCAGGAGAAGATGACAAGGAGAGATTCCACAGAAAGATGAGTGTTCGGGAGTATGAAATGATCCATGAAGAAGATGAACATTGCCTGAAACGCTACAGAAAACAGTGTATGCAGGAAATGCACGAGCGCCTGAGCTTTGGTCCTACATTTCAAGAAGTCTACGAGCTTGAGACTGGAGAAGCCTTCCTGGAAGTCATAGAGAAGGAACATCGATTGACCCAAGTGGTGGTGCACATCTACCAGCACGGTGTCAAAGGCTGTGACCAGTTGAACTCATGTCTGGACTGTCTGGCTG
>XM_039815904.1
TCTCTCTccccaccccctctctcctGTCAGTCCTCTAGATGTGGACACACTACTCAGAACATAGATACAACAATAAGACAAAGATTGAAAAAAACGAATAGGCTGTAAGAAACTTGACACACACCAGTTCTCTCTCAAGACCCAAAGACCGCTAGCAAGATGTCTGGCTCTACCCAGGAAGAAGAGGAGTTGCCTGCCAATCACACAGGTCCAAAAGGTGTAATTAATGACTGGCGAAGGTTTAAATTGGACAGTGTGGATCAGACTGTCCCTCAAAGCAAGAGAGAGCTGCTCAGACAAATGTCCAATCCAGGAGAAGATGACAAGGAGAGATTCCACAGAAAGATGAGTGTTCGGGAGTATGAAATGATCCATGAAGAAGATGAACATTGCCTGAAACGCTACAGAAAACAGTGTATGCAGGAAATGCACGAGCGCCTGAGCTTTGGTCCTACATTTCAAGAAGTCTACGAGCTTGAGACTGGAGAAGCCTTCCTGGAAGTCATAGAGAAGGAACATCGATTGACCCAAGTGGTGGTGCACATCTACCAGCACGGTGTCAAAGGCTGTGACCAGTTGAACTCATGTCTGGACTGTCTGGCTTCGGAGTACCCCAGCATTAAATTTTGTCGTATTGATGCTGTGGGCACAGGCGCTGCTGAGCGCTTCACCCCTGAGGTTCTTCCTGCCCTGCTGGTGTACAAAGCTGGCGAGTTACTTGGTAATTTCCTGGCCGTTACCAAACACTTCAATGAGAAATTCTTCGCGACAGATGTGGAGGGGTTTCTCAATGAATATGGCCTGTTACCTGAGAAGGAGTTCACGGCATGTGCCgatgatgaagaagaggagggacGTGGAATAGtagggaaaagaaagagaaaaggatgATCTTTGAGAGAAGGGGAGAAAAGATAAGCTGCAGTGGATAAAAGCGAAGAACGAGGAAAA
>XM_039815905.1
ATCTCTCTccccaccccctctctcctGTCAGTCCTCTAGATGTGGACACACTACTCAGAACATAGATACAACAATAAGACAAAGATTGAAAAAAACGAATAGGCTGTAAGAAACTTGACACACACCAGTTCTCTCTCAAGACCCAAAGAAAATCAGAAgggaaaaaaatcagaaaagggtTAGTTGCCACAACCGCTAGCAAGATGTCTGGCTCTACCCAGGAAGAAGAGGAGTTGCCTGCCAATCACACAGGTCCAAAAGGTGTAATTAATGACTGGCGAAGGTTTAAATTGGACAGTGTGGATCAGACTGTCCCTCAAAGCAAGAGAGAGCTGCTCAGACAAATGTCCAATCCAGGAGAAGATGACAAGGAGAGATTCCACAGAAAGATGAGTGTTCGGGAGTATGAAATGATCCATGAAGAAGATGAACATTGCCTGAAACGCTACAGAAAACAGTGTATGCAGGAAATGCACGAGCGCCTGAGCTTTGGTCCTACATTTCAAGAAGTCTACGAGCTTGAGACTGGAGAAGCCTTCCTGGAAGTCATAGAGAAGGAACATCGATTGACCCAAGTGGTGGTGCACATCTACCAGCACGGTGTCAAAGGCTGTGACCAGTTGAACTCATGTCTGGACTGTCTGGCTTCGGAGTACCCCAGCATTAAATTTTGTCGTATTGATGCTGTGGGCACAGGCGCTGCTGAGCGCTTCACCCCTGAGGTTCTTCCTGCCCTGCTGGTGTACAAAGCTGGCGAGTTACTTGGTAATTTCCTGGCCGTTACCAAACACTTCAATGAGAAATTCTTCGCGACAGATGTGGAGGGGTTTCTCAATGAATATGGCCTGTTACCTGAGAAGGAGTTCACGGCATGTGCCgatgatgaagaagaggagggacGTGGAATAGtagggaaaagaaagagaaaaggatgATCTTTGAGAGAAGGGGAGAAAAGATAAGCTGCAGTGGATAAAAGCGAAGAACGAGGAAAA
>XM_039815906.1
aaaatcagaaaagggtTAGTTGCCACAACCGCTAGCAAGATGTCTGGCTCTACCCAGGAAGAAGAGGAGTTGCCTGCCAATCACACAGGTCCAAAAGGTGTAATTAATGACTGGCGAAGGTTTAAATTGGACAGTGTGGATCAGACTGTCCCTCAAAGCAAGAGAGAGCTGCTCAGACAAATGTCCAATCCAGGAGAAGATGACAAGGAGAGATTCCACAGAAAGATGAGTGTTCGGGAGTATGAAATGATCCATGAAGAAGATGAACATTGCCTGAAACGCTACAGAAAACAGTGTATGCAGGAAATGCACGAGCGCCTGAGCTTTGGTCCTACATTTCAAGAAGTCTACGAGCTTGAGACTGGAGAAGCCTTCCTGGAAGTCATAGAGAAGGAACATCGATTGACCCAAGTGGTGGTGCACATCTACCAGCACGGTGTCAAAGGCTGTGACCAGTTGAACTCATGTCTGGACTGTCTGGCTTCGGAGTACCCCAGCATTAAATTTTGTCGTATTGATGCTGTGGGCACAGGCGCTGCTGAGCGCTTCACCCCTGAGGTTCTTCCTGCCCTGCTGGTGTACAAAGCTGGCGAGTTACTTGGTAATTTCCTGGCCGTTACCAAACACTTCAATGAAGACTTCTTCGCGACAGATGTGGAGGGGTTTCTCAATGAATATGGCCTGTTACCTGAGAAGGGGTTCACGGCATGTGCCGATGAtgaagaagagggagaggacGTGGAATAGtaggggaaagaaagagaaaaggatgATCTTTGAGAGAAGGGGAGAAAAAGATAAGCTGCAGTGGATAAAAGCAGAGAACgaggaaaagggaaaaggggGTATACCAGTAAAGgggcaaaaaaaagagagatgaagAAAGAAGTGGAGGAAAACAGTGGGGACAGTGTTGCAGTCAtgagttaagaaaacatttagcTACACAATAGTAAAAATCAACCAGCACACACTAAATGCTGATTGTATTTAGAAGCAGTTTGATGTAAAGGACATGGTGTGAGATAGTCTGTGCCTAAATACTGCTTTGCAGTCATATCATAGCTCTCCAATAAAAGATGACTTTACCAAAGCA

Function

NR:

description
PREDICTED: phosducin-like

GO: NA

KEGG:

id description
K08327 PDC; phosducin

RNA

RNA id representative length rna type GC content exon number start site end site
TU152498 False 617 TUCP 0.47 5 8895927 8901607
XM_039815904.1 False 951 mRNA 0.47 6 8895940 8900204
XM_039815905.1 False 995 mRNA 0.46 7 8895939 8900204
XM_039815906.1 True 1096 mRNA 0.45 6 8897482 8902847

Neighbor

gene id symbol gene type direction distance location
trnan-guu_7 NA coding upstream 1871 8893982 ~ 8894056 (+)
trnan-guu_5 NA coding upstream 5568 8890286 ~ 8890359 (+)
trnan-guu_4 NA coding upstream 13140 8882714 ~ 8882787 (+)
trnan-guu_3 NA coding upstream 16574 8879279 ~ 8879353 (+)
trnan-guu_2 NA coding upstream 21549 8874305 ~ 8874378 (+)
LOC120567618 olfml2b,LOC100693986 coding downstream 42255 8945102 ~ 8955712 (+)
prg4a LOC104954333 coding downstream 86594 8989441 ~ 8996156 (+)
odr4 LOC103370130,LOC102290351,LOC102783281 coding downstream 125710 9028557 ~ 9036694 (+)
dpydb dpyd coding downstream 145319 9048166 ~ 9064521 (+)
LOC120568868 NA coding downstream 162738 9065585 ~ 9070253 (+)
G113092 NA non-coding upstream 68478 8826367 ~ 8827449 (+)
G113050 mrpl37 non-coding upstream 123883 8771147 ~ 8772044 (+)
G113042 NA non-coding upstream 130394 8756881 ~ 8765533 (+)
G113016 NA non-coding upstream 179387 8710317 ~ 8716540 (+)
G112999 NA non-coding upstream 241313 8628572 ~ 8654614 (+)
G113131 NA non-coding downstream 53031 8955878 ~ 8957272 (+)
LOC120568741 NA non-coding downstream 64442 8967289 ~ 8969848 (+)
G113148 NA non-coding downstream 106184 9009031 ~ 9009798 (+)
LOC120569003 NA non-coding downstream 135046 9037893 ~ 9046432 (+)
G113240 NA non-coding downstream 250154 9153001 ~ 9162545 (+)
LOC120568881 mfsd12,LOC104931866 other upstream 70116 8812897 ~ 8825811 (+)
LOC120568415 LOC103370799,LOC104931865,LOC101476899,LOC102794599,LOC102300092 other upstream 86468 8789209 ~ 8809459 (+)
atg10 atg10 other upstream 180656 8708661 ~ 8715271 (+)
LOC120568257 LOC102194642,LOC101465810,LOC102289180,LOC103366014,LOC103129983,LOC107384349,LOC103396642,LOC108246689 other upstream 385519 8406929 ~ 8510408 (+)
G112932 NA other upstream 582851 8309850 ~ 8313076 (+)
G113130 NA other downstream 41630 8944477 ~ 9002568 (+)
LOC120568835 NA other downstream 1982748 10885595 ~ 10886478 (+)
pkia pkia,LOC102780447,LOC102205080 other downstream 2429721 11332568 ~ 11346225 (+)
abhd4 abhd4 other downstream 3219822 12122669 ~ 12128022 (+)
LOC120568189 nop9 other downstream 3254602 12157449 ~ 12166277 (+)

Expression


Co-expression Network