G113130


Basic Information

Item Value
gene id G113130
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8944477 ~ 9002568 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU152519
GAAGTGTACAGGGTCTCTGGGGGGCTCGGACTCTGATGTGGCGCTACTGCTGCCTTCATTGCTGTGTGACGGCTCAGAGGGACGCTGCGAGTCTGAAGAGGCTCCACACACATTGTCCTCAGCGTTGGAGGCTTCGGATGGCTCATCCTCCCCTGCTCCCTCTTCTGCCTCCCTGCTCTCCTCGttactctcctctcctccccttaTCCCGCTGTCACCAGCATCATCCTCATCTTCAtcatcctcttcttcttcttccttatAcccctcttcttcttcttcttcgtcttcttcctcctcctcttcctcttcaccTTCGTCCTCCTGCTTCTCCTCCCCCTCTTTGCTCTCACGGCTCTCGCTGTCCGTGTCGATCACGATGACGTCCCGAACAATAGCGGAGCCCTGAGAGGACATCATATCGGAGGGGACAGACTGGGACACTTCCTCGATGTCTTCGTCATCTTCAGCTAAAGTGGGGTAACAATCCTCTGGAA
>TU152520
TCTTCTTTGTACaccccctcttcttcttcttcttcgtcttcttcctcctcctcttcctcttcaccTTCGTCCTCCTGCTTCTCCTCCCCCTCTTTGCTCTCACGGCTCTCGCTGTCCGTGTCGATCACGATGACGTCCCGAACAATAGCGGAGCCCTGAGAGGACATCATATCGGAGGGGACAGACTGGGACACTTCCTCGATGTCTTCGTCATCTTCAGCTAAAGTGGGGTAACAATCCTCTGGAA

Function

GO:

id name namespace
GO:0006403 RNA localization biological_process
GO:0050657 nucleic acid transport biological_process
GO:0050658 RNA transport biological_process
GO:0051236 establishment of RNA localization biological_process
GO:0015931 nucleobase-containing compound transport biological_process
GO:0051028 mRNA transport biological_process
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03015 mRNA surveillance pathway
ko03008 Ribosome biogenesis in eukaryotes
ko03018 RNA degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU152519 True 497 TUCP 0.55 3 9001890 9002568
TU152520 False 247 lncRNA 0.53 2 8944477 9002568

Neighbor

gene id symbol gene type direction distance location
LOC120568389 kifap3,LOC103479309,LOC103146974,LOC104933922,LOC102235632,LOC100693718,LOC102779720,LOC101476805 coding upstream 24012 8870741 ~ 8920465 (+)
trnan-guu_7 NA coding upstream 50421 8893982 ~ 8894056 (+)
trnan-guu_5 NA coding upstream 54118 8890286 ~ 8890359 (+)
trnan-guu_4 NA coding upstream 61690 8882714 ~ 8882787 (+)
trnan-guu_3 NA coding upstream 65124 8879279 ~ 8879353 (+)
odr4 LOC103370130,LOC102290351,LOC102783281 coding downstream 25989 9028557 ~ 9036694 (+)
dpydb dpyd coding downstream 45598 9048166 ~ 9064521 (+)
LOC120568868 NA coding downstream 63017 9065585 ~ 9070253 (+)
LOC120568720 ptbp2,LOC103370128,LOC106917804,LOC102234855,LOC102779238,LOC105008310,LOC107570490,LOC105910816 coding downstream 69068 9071636 ~ 9093276 (+)
ca8 ca8 coding downstream 232717 9235285 ~ 9256693 (+)
G113092 NA non-coding upstream 117028 8826367 ~ 8827449 (+)
G113050 mrpl37 non-coding upstream 172433 8771147 ~ 8772044 (+)
G113042 NA non-coding upstream 178944 8756881 ~ 8765533 (+)
G113016 NA non-coding upstream 227937 8710317 ~ 8716540 (+)
G112999 NA non-coding upstream 289863 8628572 ~ 8654614 (+)
G113148 NA non-coding downstream 6463 9009031 ~ 9009798 (+)
LOC120569003 NA non-coding downstream 35325 9037893 ~ 9046432 (+)
G113240 NA non-coding downstream 150433 9153001 ~ 9162545 (+)
G113273 NA non-coding downstream 254755 9257323 ~ 9257583 (+)
G113274 NA non-coding downstream 266779 9269347 ~ 9269547 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other upstream 41630 8895927 ~ 8902847 (+)
LOC120568881 mfsd12,LOC104931866 other upstream 118666 8812897 ~ 8825811 (+)
LOC120568415 LOC103370799,LOC104931865,LOC101476899,LOC102794599,LOC102300092 other upstream 135018 8789209 ~ 8809459 (+)
atg10 atg10 other upstream 229206 8708661 ~ 8715271 (+)
LOC120568257 LOC102194642,LOC101465810,LOC102289180,LOC103366014,LOC103129983,LOC107384349,LOC103396642,LOC108246689 other upstream 434069 8406929 ~ 8510408 (+)
LOC120568835 NA other downstream 1883027 10885595 ~ 10886478 (+)
pkia pkia,LOC102780447,LOC102205080 other downstream 2330000 11332568 ~ 11346225 (+)
abhd4 abhd4 other downstream 3120101 12122669 ~ 12128022 (+)
LOC120568189 nop9 other downstream 3154881 12157449 ~ 12166277 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other downstream 3580074 12582642 ~ 12599840 (+)

Expression


Co-expression Network