LOC120569003


Basic Information

Item Value
gene id LOC120569003
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 9037893 ~ 9046432 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU152567
CTCGAATTTGTTAAATAAAGGTTGgattgaaagagaaaaaaaatataaaaattcagCGTCGTCACAGTGTTGCATTCATTTTCAAACGCGAGGGAGTGCTAaatgcattgacatatattaGAAGTTATTTgttgacatatatataaaatgcagctagctagctagttagttaaGAAACTTGCTATTCAAAAGACCTGATGGAGGTGACAGAATCCGAAGGACCCAGCTACTGTCACGCTCACATGTCAGCCAGCCACATATGAAGAAGCACCCGGCACCACGCtgtccGCTGTGGAAAGTGTTGAAGCGCTGGAGCCCAAGAGAAACAACTATATTGGTGTTGCCATGGCTTCTGCTGTCGCCCTACTTGCCACTGCTGCCTCAATGCTCTATCTCAGTGACGTTtaatacacacatatgcacacaccaaaataaagtgtttgttTATAACATTTA
>XR_005640818.1
GTGTTGCATTCATTTTCAAACGCGAGGGAGTGCTAaatgcattgacatatattaGAAGTTATTTgttgacatatatataaaatgcagctagctagctagttagttaaGAAACTTGCTATTCAAAAGACCTGATGGAGGTGACAGAATCCGAAGGACCCAGCTACTGTCACGCTCACATGTCAGCCAGCCACATATGAAGAAGCACCCGGCACCACGCtgtccGCTGTGGAAAGTGTTGAAGCGCTGGAGCCCAAGAGAAACAACTATATTGGTGTTGCCATGGCTTCTGCTGTCGCCCTACTTGCCACTGCTGCCTCAATGCTCTATCTCAGTGACGTTtaatacacacatatgcacacaccaaaataaagtgtttgttTATAACATTTA
>XR_005640819.1
CTgtcgatagaaaaaaaaacgcgCCGAAGCTCCTAGCGAACTGGTGCCGccagctaatgcccagagctcccAGTGCCTATTAAAAAGcaccagtgtgtaacgtttGTGACAGAATCCGAAGGACCCAGCTACTGTCACGCTCACATGTCAGCCAGCCACATATGAAGAAGCACCCGGCACCACGCtgtccGCTGTGGAAAGTGTTGAAGCGCTGGAGCCCAAGAGAAACAACTATATTGGTGTTGCCATGGCTTCTGCTGTCGCCCTACTTGCCACTGCTGCCTCAATGCTCTATCTCAGTGACGTTtaatacacacatatgcacacaccaaaataaagtgtttgttTATAACATTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152567 True 456 lncRNA 0.41 4 9037893 9046432
XR_005640818.1 False 390 lncRNA 0.43 4 9037959 9046432
XR_005640819.1 False 358 lncRNA 0.49 4 9038200 9046432

Neighbor

gene id symbol gene type direction distance location
odr4 LOC103370130,LOC102290351,LOC102783281 coding upstream 1199 9028557 ~ 9036694 (+)
prg4a LOC104954333 coding upstream 41737 8989441 ~ 8996156 (+)
LOC120567618 olfml2b,LOC100693986 coding upstream 82181 8945102 ~ 8955712 (+)
trnan-guu_7 NA coding upstream 143837 8893982 ~ 8894056 (+)
trnan-guu_5 NA coding upstream 147534 8890286 ~ 8890359 (+)
dpydb dpyd coding downstream 1734 9048166 ~ 9064521 (+)
LOC120568868 NA coding downstream 19153 9065585 ~ 9070253 (+)
LOC120568720 ptbp2,LOC103370128,LOC106917804,LOC102234855,LOC102779238,LOC105008310,LOC107570490,LOC105910816 coding downstream 25204 9071636 ~ 9093276 (+)
ca8 ca8 coding downstream 188853 9235285 ~ 9256693 (+)
tox tox,LOC106524915,LOC101481153 coding downstream 240721 9287153 ~ 9339618 (+)
G113148 NA non-coding upstream 28095 9009031 ~ 9009798 (+)
LOC120568741 NA non-coding upstream 68045 8967289 ~ 8969848 (+)
G113131 NA non-coding upstream 80621 8955878 ~ 8957272 (+)
G113092 NA non-coding upstream 210444 8826367 ~ 8827449 (+)
G113050 mrpl37 non-coding upstream 265849 8771147 ~ 8772044 (+)
G113240 NA non-coding downstream 106569 9153001 ~ 9162545 (+)
G113273 NA non-coding downstream 210891 9257323 ~ 9257583 (+)
G113274 NA non-coding downstream 222915 9269347 ~ 9269547 (+)
G113290 NA non-coding downstream 328017 9374449 ~ 9375105 (+)
LOC120568401 NA non-coding downstream 420866 9467298 ~ 9469320 (+)
G113130 NA other upstream 35325 8944477 ~ 9002568 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other upstream 135046 8895927 ~ 8902847 (+)
LOC120568881 mfsd12,LOC104931866 other upstream 212082 8812897 ~ 8825811 (+)
LOC120568415 LOC103370799,LOC104931865,LOC101476899,LOC102794599,LOC102300092 other upstream 228434 8789209 ~ 8809459 (+)
atg10 atg10 other upstream 322622 8708661 ~ 8715271 (+)
LOC120568835 NA other downstream 1839163 10885595 ~ 10886478 (+)
pkia pkia,LOC102780447,LOC102205080 other downstream 2286136 11332568 ~ 11346225 (+)
abhd4 abhd4 other downstream 3076237 12122669 ~ 12128022 (+)
LOC120568189 nop9 other downstream 3111017 12157449 ~ 12166277 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other downstream 3536210 12582642 ~ 12599840 (+)

Expression


Co-expression Network