G113498 (LOC104957117)


Basic Information

Item Value
gene id G113498
gene name LOC104957117
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 10926456 ~ 10928243 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU153008
GTCCGTCATCACGTTGCGTCCGTCAAAGGAGTAGATGGGTGTGAAGGGGTCAAATGTGCCTCCATTCCCAGAGAAGATGGACATCCAACTACTGAACAGCACTTCACCCCTGAGGTTAACTACGGGCATGTCATTGCGATCCACCTTCCTCACGATGGTTGACAGGTCCTGGAGGTGTGAGGACAGGAAGGCCCTGTAGGTGGCTGTTAGCCCCATGGAGCGGGCCTGCTGGTAGCACTGGAAGTCTGCCCCGCGGATTCCACGCATGTCCCCTTTCAGCGGGGTGTTCAATGCTACCAGATGGAGCTGGGAAAGAGAAAATCCAGTCAGTCATTCCAGCTTTCAACTATTCACAAAACCTTCAGCTATTAGAACATGATTTAGCTATTTTTAGActttttgtgtggagtttgcatgttcttccagactttctttgacatactatactatgactttttttatatccg

Function

NR:

description
PREDICTED: collagen alpha-1(XV) chain-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153008 True 467 lncRNA 0.49 2 10926456 10928243

Neighbor

gene id symbol gene type direction distance location
xrn1 xrn1 coding upstream 8951 10892377 ~ 10917505 (+)
cop1 rfwd2 coding upstream 44804 10868042 ~ 10881652 (+)
astn1 astn1 coding upstream 61074 10298706 ~ 10865382 (+)
klhl20 klhl20,LOC106569069 coding upstream 1085678 9826159 ~ 9840778 (+)
LOC120567595 LOC104937197,LOC103364125,LOC101484549,LOC100690053 coding upstream 1102751 9816589 ~ 9823705 (+)
LOC120567859 NA coding downstream 148989 11077232 ~ 11078874 (+)
LOC120567857 LOC103355151,LOC102312891,LOC104961060,LOC101474626 coding downstream 155620 11083863 ~ 11095487 (+)
LOC120567862 LOC104961053,LOC103355148,LOC107384202 coding downstream 168534 11096777 ~ 11100216 (+)
LOC120567856 LOC104929871,LOC103355149,LOC100690953,LOC102207159 coding downstream 172035 11100278 ~ 11123475 (+)
LOC120567621 LOC103360515,LOC104929875 coding downstream 199776 11128019 ~ 11139884 (+)
G113492 NA non-coding upstream 38789 10886992 ~ 10887667 (+)
LOC120569030 NA non-coding upstream 83236 10840517 ~ 10843220 (+)
LOC120569032 NA non-coding upstream 87353 10837503 ~ 10839103 (+)
G113446 NA non-coding upstream 1082973 9842701 ~ 9843483 (+)
G113429 NA non-coding upstream 1112214 9811980 ~ 9814242 (+)
LOC120567863 NA non-coding downstream 118313 11046556 ~ 11055806 (+)
G113619 NA non-coding downstream 591057 11519300 ~ 11524768 (+)
G113620 NA non-coding downstream 596735 11524978 ~ 11525250 (+)
G113621 NA non-coding downstream 597768 11526011 ~ 11579470 (+)
LOC120568871 NA non-coding downstream 654661 11582904 ~ 11694250 (+)
LOC120568835 NA other upstream 39978 10885595 ~ 10886478 (+)
G113130 NA other upstream 1923888 8944477 ~ 9002568 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other upstream 2023609 8895927 ~ 8902847 (+)
LOC120568881 mfsd12,LOC104931866 other upstream 2100645 8812897 ~ 8825811 (+)
LOC120568415 LOC103370799,LOC104931865,LOC101476899,LOC102794599,LOC102300092 other upstream 2116997 8789209 ~ 8809459 (+)
pkia pkia,LOC102780447,LOC102205080 other downstream 404325 11332568 ~ 11346225 (+)
abhd4 abhd4 other downstream 1194426 12122669 ~ 12128022 (+)
LOC120568189 nop9 other downstream 1229206 12157449 ~ 12166277 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other downstream 1654399 12582642 ~ 12599840 (+)
LOC120568152 LOC104963178 other downstream 1973296 12901539 ~ 12907243 (+)

Expression


Co-expression Network