G113677 (tmem53,LOC102777675)


Basic Information

Item Value
gene id G113677
gene name tmem53,LOC102777675
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 11534999 ~ 11540267 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU153233
TTTTCTATGAGCATTCTACTTTATTGAAGGCACATCAgtaaaaaaagaacacaatAGTTGTTCTGGACATATACATTCATTGTCAATCACATTTTCCTTGAACTAAATCAATTGTGTATCACATATTAGGGCTGGGTGTTCTACAATTtatggaccccccccccccaaaaaaaaaaaagtctgattaAGGCAACAAttgagatttcttttttaattcctTTTTGAATTTTGTCGCCTTTATTTTAAGTGCCCTTGTGATCTAATATTAATGACAAATTGTTAGATTAAAACTATacattgtaaatgtaataaatagaAGATATAAATGATTATCCAATACAGCCTCAGATTTAGAATCACTACTACTAATGTACAATGCATCACATTTCACAtcaatattaaatatttaaattatcctaaaggatttattttccaatgttgtttgtattgttatttttacaTATAGTATATGACTGTTGCAAAAACATTGGAGTTGGCAGGGTTAGGCCACACACTTCAGGGGTATATGAATTACAGTATTTCATATGGCTGGTTTTCTAGACATGGATTAGTACACCTAGACCACATGTGTGGAACTTTGCCATTATGTGCACTGGGACAGAAAAGCATTGAGATCTTGTACTAGTTCAGCTCAAATTCCAGCAGTCCTGCAAAAAAATGTCAGCCTCATTTTCTAACTGATTTTTCAGACCACTGAGAAAAACCAAGTTGGTCTGATTTGGTCTGATTTTCTTCGCAAGACAGCTTAACAGAGGGTTAGCAAAATCGTGTGAGCTTCTCTCCGCGTTTCATTGATTCGGAACCCTCTGTCTCTTCTTTGTCTCGTTCCCTTCCAAGTCCTTCATGCAAGCAACCAGGAAACTGCGGCACTTCAGAGCATACTGCTCAGGAAAGTCCCGGAAATGACCAACGTGGGGACtggaaacaaaatcaaaactgTCCACCGGGACGCCTTTCTGCTTCAGGGTCTCCACAAAGACCTTGATGTCTGTGTGCCTGATCACCTGGTCAGCTCGGGAGTACAGGTAGAAATGAGGCCAGGCGGGCGGACGCTCCTGCACGGCGTCATAGTGGTTCTTGTGGATGTACTTGGTCAAGGGGTACAGCACGACTCGCAACAGGAAAACAGTCACTGCGAATAGCGCCAAGAGGACGTACCTTAAAACAGGAGTTATTTTGGGCCCCAGGGTGGCCGCCAGTGCACGCAGGGCCCCGCGGACGTTCCCACTACCTGGGGCACTGTCCACTAAGGCCCCAATCACACACAAGGAACTGAACTGTTTATCATTGTGCAACAAATCTGCAATGTAACGGTACAGCATGAAGCCACCATTGCTGAATATGTGAAAGAAAATAGGACTGTTCTCCACCTCATAGTCATAGAGAATCTCCAGCAACTTAAGGGCCGTACTGCTCAGCTCCTTGTAGCCAAACGACTCTGAGATGAAGACTGTCTTCAAGGGAGCGGTGTAGCGGATGGTGACACATCCCTAAAAGCATACTCCAAATAGGAGGCAGTGAGCCGGAGCTCAAATTCAGTGACATATTTGGTGTCATAGATGCCAGCAGGAAACATCTCAGACAGGTCGGATGTGAAGTTGGCCAAGCGGTCAGGCAGATGTGCATAAAAac

Function

symbol description
tmem53 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM53 (transmembrane protein 53).

NR:

description
PREDICTED: transmembrane protein 53

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153233 True 1653 lncRNA 0.43 2 11534999 11540267

Neighbor

gene id symbol gene type direction distance location
si:ch73-382f3.1 LOC104929977,LOC103369580 coding downstream 4194 11527843 ~ 11530805 (-)
selenop2 LOC103369579 coding downstream 10162 11519469 ~ 11524837 (-)
LOC120568667 LOC101071843,LOC104929975 coding downstream 33261 11500364 ~ 11501738 (-)
zswim5 zswim5 coding downstream 72387 11390884 ~ 11462612 (-)
ctnnd2b ctnnd2,LOC101475998,LOC102313221,LOC100711149,LOC102780722 coding downstream 213996 11151427 ~ 11321003 (-)
pigr NA coding upstream 569005 12109272 ~ 12113247 (-)
dad1 dad1,LOC101158164 coding upstream 576535 12116802 ~ 12122078 (-)
tgm1l1 LOC103370497 coding upstream 591170 12131437 ~ 12152081 (-)
rem2 rem2 coding upstream 636590 12176857 ~ 12207670 (-)
carmil3 NA coding upstream 689854 12230121 ~ 12328040 (-)
G113667 NA non-coding downstream 88728 11424184 ~ 11446271 (-)
G113653 NA non-coding downstream 131769 11357734 ~ 11403230 (-)
G113656 NA non-coding downstream 167395 11365371 ~ 11367604 (-)
LOC120568658 NA non-coding downstream 205165 11324606 ~ 11329834 (-)
G113627 NA non-coding downstream 411523 11119002 ~ 11123476 (-)
G113700 NA non-coding upstream 70330 11610597 ~ 11610879 (-)
G113708 NA non-coding upstream 255438 11795705 ~ 11876028 (-)
G113722 NA non-coding upstream 418183 11958450 ~ 11958661 (-)
G113729 NA non-coding upstream 451477 11991744 ~ 12035749 (-)
G113731 NA non-coding upstream 480686 12020953 ~ 12059116 (-)
LOC120567758 NA other downstream 646047 10887007 ~ 10888952 (-)
brinp2 brinp2,LOC103369811 other downstream 1267921 10040686 ~ 10267078 (-)
LOC120568397 NA other downstream 2024502 9400787 ~ 9510497 (-)
chd7 chd7,LOC103370133,LOC102782711 other downstream 2340127 9114384 ~ 9194872 (-)
G113070 NA other downstream 2744957 8780452 ~ 8790042 (-)
G113805 NA other upstream 677795 12218062 ~ 12218267 (-)
nedd8l LOC104931181,LOC104949953,LOC107384241,LOC103360313 other upstream 1060913 12601180 ~ 12608569 (-)
LOC120568934 LOC104956577 other upstream 1220481 12760748 ~ 12768625 (-)
LOC120568578 wdr48 other upstream 1426199 12966466 ~ 12975328 (-)
G114152 NA other upstream 1544294 13084561 ~ 13088563 (-)

Expression


Co-expression Network