LOC120568189 (nop9)


Basic Information

Item Value
gene id LOC120568189
gene name nop9
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12157449 ~ 12166277 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU153339
GTCTATACATCCATGCTGTCTATGGGACTTGCTTAGTAGTAGGCGCCGCCCAATACTACGTCATCACTACGCGTCCACAACACAGGTCTTCTCCTTCTCATCTCACACCCAGAAGATCAAACTGAGCATCCTCCCTAACAAGAAAGACCCAGACATTCTACTTGTAACCTGCATGCTGTAAGGTCCAAGCTATGTTGACGAAAACGGAGGAAAGGAAGCCACAGAaaggggaaggaaagaagaggagacaTCCTGGTGAAgatggagaaggaggagaaagcAAGAGGAGGGGAGGTGAAGAAGGAAAAGGGGGTCAGGGAGACGGTGGCAGGAAGCGTCTGGACGCCCTGAGTGTGGGCTATTTCCGCCGAGTTGGGGAAAGACTCACTGAAGGCTTCGAAGATAATGAGGAGAGAGAGATGTTTGTGGAAAATGTCCTGACAGAAGTGAAAGGTAAAGCGACGGTGGTGTCGATGGACCAGACGGGAAGCATCACCCTGCAGCGGCTGCTCCCACTGTGCAGTCCTGACCAGGTGGCCACGGTGCTGGCTGAACTGGGTGGAGAATCCGGGTCCGAGTTTAAAGCGGTTTCTTGTGATCGGTGCGGCGGCCACGTAGTGGAGAGTGCAGTCAGACAGATATCCAGGTGGACAGAGTCGTCTGctaccacagaagaagaagaagaggagagttGTGGAGCGTTGGAGGCCCAGGTGTTGTCTTTAAGTAAGGCGGTGAGAGACAACAGC
>TU153340
ACTACGCGTCCACAACACAGGTCTTCTCCTTCTCATCTCACACCCAGAAGATCAAACTGAGCATCCTCCCTAACAAGAAAGACCCAGACATTCTACTTGTAACCTGCATGCTGTAAGGTCCAAGCTATGTTGACGAAAACGGAGGAAAGGAAGCCACAGAaaggggaaggaaagaagaggagacaTCCTGGTGAAgatggagaaggaggagaaagcAAGAGGAGGGGAGGTGAAGAAGGAAAAGGGGGTCAGGGAGACGGTGGCAGGAAGCGTCTGGACGCCCTGAGTGTGGGCTATTTCCGCCGAGTTGGGGAAAGACTCACTGAAGGCTTCGAAGATAATGAGGAGAGAGAGATGTTTGTGGAAAATGTCCTGACAGAAGTGAAAGGTAAAGCGACGGTGGTGTCGATGGACCAGACGGGAAGCATCACCCTGCAGCGGCTGCTCCCACTGTGCAGTCCTGACCAGGTGGCCACGGTGCTGGCTGAACTGGGTGGAGAATCCGGGTCCGAGTTTAAAGCGGTTTCTTGTGATCGGTGCGGCGGCCACGTAGTGGAGAGTGCAGTCAGACAGATATCCAGGTGGACAGAGTCGTCTGctaccacagaagaagaagaagaggagagttGTGGAGCGTTGGAGGCCCAGGTGTTGTCTTTAAGTAAGGCGGTGAGAGACAACAGC
>XM_039815525.1
CTGTCTATACATCCATGCTGTCTATGGGACTTGCTTAGTAGTAGGCGCCGCCCAATACTACGTCATCACTACGCGTCCACAACACAGGTCTTCTCCTTCTCATCTCACACCCAGAAGATCAAACTGAGCATCCTCCCTAACAAGAAAGACCCAGACATTCTACTTGTAACCTGCATGCTGTAAGGTCCAAGCTATGTTGACGAAAACGGAGGAAAGGAAGCCACAGAaaggggaaggaaagaagaggagacaTCCTGGTGAAgatggagaaggaggagaaagcAAGAGGAGGGGAGGTGAAGAAGGAAAAGGGGGTCAGGGAGACGGTGGCAGGAAGCGTCTGGACGCCCTGAGTGTGGGCTATTTCCGCCGAGTTGGGGAAAGACTCACTGAAGGCTTCGAAGATAATGAGGAGAGAGAGATGTTTGTGGAAAATGTCCTGACAGAAGTGAAAGGTAAAGCGACGGTGGTGTCGATGGACCAGACGGGAAGCATCACCCTGCAGCGGCTGCTCCCACTGTGCAGTCCTGACCAGGTGGCCACGGTGCTGGCTGAACTGGGTGGAGAATCCGGGTCCGAGTTTAAAGCGGTTTCTTGTGATCGGTGCGGCGGCCACGTAGTGGAGAGTGCAGTCAGACAGATATCCAGGTGGACAGAGTCGTCTGctaccacagaagaagaagaagaggagagttGTGGAGCGTTGGAGGCCCAGGTGTTGTCTTTAAGTAAGGCGGTGAGAGACAACAGCTTAAAATCGGTCATGGCTTAGCGTTCGAAATATTATGCAgaaacactgatgtCTATGCCGGCCCAGTGTGTCAGACCTGTACACACAGAGGCTTGTCTCTTTCAGCTTGTGTTCATGTCGCCTTTGTTATTTGTTTCCCCAGGTGCAAAAGAACGCAACGTTGCTCCTCAGCTGACAGACTTTGAGATTCCCACTGCATTTTGGTACGAGCTGAAAAGCCTTACAGAGACCTTGATGGACAACGTGAATCTAAGTGTGATCGACGCTGTTGCAAGTGTCGTGTTCCAGACCATGTTGACTGTGTGTCACAGAAAGCGGCCTAAACTCTGCAAACAGCTCCTCAAACGCATCATGGAGTACCTGACAAGTCGCAACGCCGCTCCAGGAGTGAGtcCACTTCTGGTCTTTCTCAAGGACAAGGCCTCCAGCCACCTCATTGAGACGATCATACAGCTATCCCACAAGTCCCTTCTCCGGGACCTCTACAAGAACCACCTCAAGGGTCAGCTGGTTGACTTGGCCCTCCATTCCATCGCCAACTTCCCCATACAGAGGCTAACCGCAGCCTCGGCCAAATCCAAACTGtTCCTGAAGTTGTTTGATGAGCTGATCCAAGGCGTGGAGGCCATCCTGGCTGCAGGTCACATGGGGGTGATTGTCCAACTGGCCGAGAGCTGTGCAGAAAGCgaagagaaacaggaggagatgATGCAGTGCCTCCTCCGCGCGTTCCACTGTGCCGAGCCCGGCTCTCGACACGTCAGCTGCCTCCCTCTCTTCATGTCCCTGATCACCTATGAGGTGTATTACCACTCTGACACAGCAGAGGGCAACATACAGACAGAGGTCCCCCTGTCGTCCATCTGTTACCACGGCTCCCGGCTGGTCCAGGCACTGGCCAAGTTCAAGGAGCGCTCACTCCTCCTCAGCAGCCTGCGCACTCTGAGCCCCGCTGACCTCCTGACGCTGGCTTCCGACCCGTCGGGCAGCCACGTCCTCCAGGCCCTCATCACCACGTCCAGTGACAAGGGCAGAGGCAAGATCCTCAAGAGACTGGAGGGCCAGTATGTTCAGATGGCCTGCTCCAGGTTGGGTAGTCGGGTGCTGGAAGCCGTATGGAACAGTGCTACAGTCAGTCACAGGCAAAGCATCGCACAGGAACTAGTGCTGATTGAAAGCCAGCTGAGGTCGGATCAGTTTGCTCGCCATGTGTGGGCCAAATTTGCCCTCTCCCACTTCATCCACAGAAGAGCTCACTGGCAGGAAATACAGACGGGCGAATCCAAGAAGCGGAAGCTGTTCAGTGACATccttgagtaaaaaaaaaaataaaatacatatttatataatgTGTTAGTGTATTggatacaataaaataaagaagaaaatattctgta

Function

symbol description
nop9 Enables RNA binding activity. Predicted to be involved in ribosome biogenesis. Predicted to be part of 90S preribosome and preribosome, small subunit precursor. Predicted to be active in nucleolus.

NR:

description
PREDICTED: nucleolar protein 9

GO: NA

KEGG:

id description
K14790 NOP9; nucleolar protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
TU153339 False 749 TUCP 0.53 4 12157451 12160255
TU153340 False 684 TUCP 0.53 4 12157516 12160255
XM_039815525.1 True 2148 mRNA 0.53 13 12157449 12166277

Neighbor

gene id symbol gene type direction distance location
lrrc24 LOC103370491,LOC104954089,LOC102776146,LOC102302164 coding upstream 67888 12074976 ~ 12089561 (+)
slc6a9 slc6a9,LOC102776426 coding upstream 95206 11981139 ~ 12062243 (+)
klf17 klf2 coding upstream 190841 11963978 ~ 11966608 (+)
rnf220a rnf220,LOC103363915,LOC101079104,LOC103396675,LOC102292039,LOC102777210 coding upstream 282955 11722117 ~ 11874494 (+)
tmem53 tmem53,LOC102777675 coding upstream 617187 11538054 ~ 11540262 (+)
prmt5 prmt5 coding downstream 389409 12555686 ~ 12562978 (+)
slc7a8b slc7a8 coding downstream 399717 12565994 ~ 12581212 (+)
zp3f.2 NA coding downstream 439117 12605394 ~ 12608144 (+)
LOC120568040 NA coding downstream 442880 12609157 ~ 12611158 (+)
LOC120568617 rnf212b coding downstream 445865 12612142 ~ 12616610 (+)
G113763 NA non-coding upstream 5292 12144568 ~ 12152157 (+)
G113697 NA non-coding upstream 201903 11955286 ~ 11955546 (+)
LOC120568095 NA non-coding upstream 202572 11878713 ~ 11954877 (+)
G113696 NA non-coding upstream 213093 11943899 ~ 11944356 (+)
G113689 NA non-coding upstream 269780 11827403 ~ 11887669 (+)
G113773 NA non-coding downstream 11582 12177859 ~ 12200219 (+)
G113776 NA non-coding downstream 41449 12207726 ~ 12208026 (+)
G113777 NA non-coding downstream 41827 12208104 ~ 12208318 (+)
G113778 NA non-coding downstream 42437 12208714 ~ 12209440 (+)
G113782 NA non-coding downstream 55099 12221376 ~ 12221684 (+)
abhd4 abhd4 other upstream 29427 12122669 ~ 12128022 (+)
pkia pkia,LOC102780447,LOC102205080 other upstream 811224 11332568 ~ 11346225 (+)
LOC120568835 NA other upstream 1270971 10885595 ~ 10886478 (+)
G113130 NA other upstream 3154881 8944477 ~ 9002568 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other upstream 3254602 8895927 ~ 8902847 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other downstream 416365 12582642 ~ 12599840 (+)
LOC120568152 LOC104963178 other downstream 735262 12901539 ~ 12907243 (+)
LOC120567760 LOC103360284,LOC108238605,LOC104963178 other downstream 745162 12911439 ~ 12919198 (+)
G113979 LOC104959684 other downstream 762938 12929215 ~ 12975637 (+)
LOC120569010 NA other downstream 786271 12952548 ~ 12960349 (+)

Expression


Co-expression Network