nedd8l (LOC104931181,LOC104949953,LOC107384241,LOC103360313)


Basic Information

Item Value
gene id nedd8l
gene name LOC104931181,LOC104949953,LOC107384241,LOC103360313
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12601180 ~ 12608569 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU153583
ATTATCACAATGTATGGCATGATTTGCAGCAAGAGCTTGGAACAAATGGGAAGGTATTCAGAAGAAAAATGTATATCCCTATTCATGGGTTACatcctgtaaaataaaatagtcACATGGCCTACACTGTATAAAGATGAGTCTGAGGGCCACATTGTAATTGAGACAGTCTTGCCTTAGAGAAATCATCCAGGTGCTGTACAGCCAAAGAGTTGAGTCAGTTGCATTGAAACTTCTAAACCAGTGATGGGAGAAGAGATTAGTTTACAGGCTGAGATTTACCACAGACATCAAGAAATTGTGTAGCAGGTTACAGCTCAGATATGCAACTTGGACTTTAAAGTCTGGATACTTTCACTTTATCattccctgaaaaaaaaaattatggtATGAATACAGCTTTTAAGAAAAATAAGTAATCTCACTGAAGTTTTCACCAGGTTTATTTGTACAGAGGCTTTAATATTTATGATAGACAATTCAAATTAATCTGCAACAGTTTTAGATCATTAAGCAGATGTCTGTCTTGTAAGTCAGGAGGCCGAGGTCATCTGCTACTGGCCCCTCTGTTGGGATCATAATCTCCATCATCTTGGGCTGGGCCTTCTGTTGAGAACTTTTCATCATATTCCATATCCGTTTTTAGTCATGCGTTTAACAAAACGCTCCATTTCAGGACATCAAGACCTTAAACCCTAAATGCTCATCATTGCACCTCCGCTGCAGTAAGAGACACCTCCGATATGTCCTGGACGTTTGAGTCAGAAGGATCAATTACGATCAGGGGTCCCAACACTGAATTGTGACTAAAGCCTTTAGATTCTGAAAAGGAGAAAGATTATGACTTCATGAGGAAACCGCACAAAATGGAAATAAACCACCCAAATTGTCAGAAAAAGAGATACCCCATTTGACAGCTCTTTTTAAGCGAGGGGTGCAGGTTGAATCACAGCAGCTACAGACGGAGCTCTGAGAAGGGTCATCGAGTAGTTCCCATCTGACAACTCAGCTTCTCCTTTACATAATGGCAAGCTTTCTTGGTTTCATCAAGAACTTCAGGATCCCATGCAACCAGCTTACAGTGAATGTCACCTCATTTCCAAGAGGAAACTTGAAGGACTGCAGGAAAAGGACAAGTGCAGATGAGTGGTAGCGAGGGAGGAACACAGAGTTTGCCTTCATGCTCTCCCAAAATACCCCTTATTGCCAATGATAGGGTAAACCTGGCTGTCAAGCTGCAGCTCTGGTGTAGTGGCTGCCACACATTCCTCTATGAGCAACAGCAAGGGTTGGTGGGACTTCTGCTCCACTGCCGCCCATATTGGCATGAACGAGCCCAGGGGGATGACGTTGGTCTTTGCTACACTTGTTAATTCCTCTGTAGGGGAAGTAAAAAAGGATTAGAATGGGTCTTTGAGTATCATGTTGTATTTAGTCCTGAGAACTCACCATTGAGGAGTTCCATGTGGAAAACCAGCCTGCCTCGGCCTTCAGAAAAACTGGATCCAGGATTCAGGAAAGTGGGGACCCACCCCTCAGGCTTTTATAAGCACACTCAATGGGATACACAAAGGAAGCAGGTTTGGACTTTTTATTTGGTCTGAAAGTCAGCTCATTTTGATAGAGGAGATGCTTTCCTTTCacctTCTTTTAAACTTGCAGTTAACTAGTTTGTAATTGAACTCTGCTTCCCCCTCTCCGCTGGGCAGAACATTAAATTTAGATGGTAAGCAGCTTCCAAGGAAGAGACGAGCAGCATGTGGCACCAACTCCGCATTGATCCTCCATGTGATCATTATGGAGTCTTGTTCACAGACTACTTTGATAGCTGCAAACAAATTCTCATGACACCAGTTTCTGAAACACTTGACCATAACCAGAAGGTTGACACATTACTACATACACGTGCAAATACTACCTGTATTAGCATCAGTTGTTGCAAAAACAGCCATGATTACCACACCGAGGAAGAGTTGAGCCACCATGACTGAATGATTAAGGTCACATTGGAAGTGACACTATTTGTAGACTTCCTGCCAAATTAGCAGAATGATTAACACCTGTGTGAGAGCAGGGCATCGTTATGCTGGGgtgtttttgtgcattttcAAAATTTAATATTGCAGGGTGTTCATTTTGACAACTTCTAAATGAAAAGGGACATAACTGTAGCCTACCTTTATTCAAGTACTACTCTCACTGGAAAAGAAATAGAGATCGACATTGAGCCCACAGACAAGGTGGAGCGAATAAAAGAGAGGGTGGAGGAGAAGGAAGGGATCCCCCCGCAGCAACAGAGACTCATCTACAGTGGAAAACAGATGAATGATGAGAAGACGGCTGCCGACTACAAGATCCAGGGAGGCTCGGTGCTCCATCTTGTGTTGGCGCTAAGAGGCGGCTCAACGCTCCACGGGCCCTGCATACACCTCTCCTCCTTGTCATGAGTTGATTTTGTCATGGGGCCAGCGAGTGCCAACGCTTTAGGTGTCTGTCACCGTCTAACCATGTTTCAGCACAGAGATCTGAAATCCTACGCTCCTGTgcaaatgcacaaaaaaaaaataaaaaaaataatcaaccaACAACGGCAATAACGAGAAAAAAGGACGTTCTAATTcctttgtaaatgttttttgtaaacCCACATTGGCTTTCTGATTTTGACCAGTTGATGCTGGCACCCACGCAGTACAAAAGACAGTTTGAAAACAGTGTTCTTTTTGCTTGTGAATAAATGCTGAAGTTGA
>TU153584
AGTGTTTAGCGTTGTACACAGGAAGTAGCTTCAAGTCTGACAGAGAAGGAGGTTGTAATTTGCAAGTATATCAAGAGTTTTGGTCAGTTAACAGTACATTCAATTTCGAGTTGTTGTACATTGTTTATTCAAGATGCTGATCAAAGTTAAGACTCTCACTGGAAAAGAAATAGAGATCGACATTGAGCCCACAGACAAGGTGGAGCGAATAAAAGAGAGGGTGGAGGAGAAGGAAGGGATCCCCCCGCAGCAACAGAGACTCATCTACAGTGGAAAACAGATGAATGATGAGAAGACGGCTGCCGACTACAAGATCCAGGGAGGCTCGGTGCTCCATCTTGTGTTGGCGCTAAGAGGCGGCTCAACGCTCCACGGGCCCTGCATACACCTCTCCTCCTTGTCATGAGTTGATTTTGTCATGGGGCCAGCGAGTGCCAACGCTTTAGGTGTCTGTCACCGTCTAACCATGTTTCAGCACAGAGATCTGAAATCCTACGCTCCTGTgcaaatgcacaaaaaaaaaataaaaaaaataatcaaccaACAACGGCAATAACGAGAAAAAAGGACGTTCTAATTcctttgtaaatgttttttgtaaacCCACATTGGCTTTCTGATTTTGACCAGTTGATGCTGGCACCCACGCAGTACAAAAGACAGTTTGAAAACAGTGTTCTTTTTGCTTGTGAATAAATGCTGAAGTTGA
>TU153585
ATTATCACAATGTATGGCATGATTTGCAGCAAGAGCTTGGAACAAATGGGAAGGTATTCAGAAGAAAAATGTATATCCCTATTCATGGGTTACatcctgtaaaataaaatagtcACATGGCCTACACTGTATAAAGATGAGTCTGAGGGCCACATTGTAATTGAGACAGTCTTGCCTTAGAGAAATCATCCAGGTGCTGTACAGCCAAAGAGTTGAGTCAGTTGCATTGAAACTTCTAAACCAGTGATGGGAGAAGAGATTAGTTTACAGGCTGAGATTTACCACAGACATCAAGAAATTGTGTAGCAGGTTACAGCTCAGATATGCAACTTGGACTTTAAAGTCTGGATACTTTCACTTTATCattccctgaaaaaaaaaattatggtATGAATACAGCTTTTAAGAAAAATAAGTAATCTCACTGAAGTTTTCACCAGGTTTATTTGTACAGAGGCTTTAATATTTATGATAGACAATTCAAATTAATCTGCAACAGTTTTAGATCATTAAGCAGATGTCTGTCTTGTAAGTCAGGAGGCCGAGGTCATCTGCTACTGGCCCCTCTGTTGGGATCATAATCTCCATCATCTTGGGCTGGGCCTTCTGTTGAGAACTTTTCATCATATTCCATATCCGTTTTTAGTCATGCGTTTAACAAAACGCTCCATTTCAGGACATCAAGACCTTAAACCCTAAATGCTCATCATTGCACCTCCGCTGCAGTAAGAGACACCTCCGATATGTCCTGGACGTTTGAGTCAGAAGGATCAATTACGATCAGGGGTCCCAACACTGAATTGTGACTAAAGCCTTTAGATTCTGAAAAGGAGAAAGATTATGACTTCATGAGGAAACCGCACAAAATGGAAATAAACCACCCAAATTGTCAGAAAAAGAGATACCCCATTTGACAGCTCTTTTTAAGCGAGGGGTGCAGGTTGAATCACAGCAGCTACAGACGGAGCTCTGAGAAGGGTCATCGAGTAGTTCCCATCTGACAACTCAGCTTCTCCTTTACATAATGGCAAGCTTTCTTGGTTTCATCAAGAACTTCAGGATCCCATGCAACCAGCTTACAGTGAATGTACCTCATTTCCAAGAGGAAACTTGAAGGACTGCAGGAAAAGGACAAGTGCAGATGAGTGGTAGCGAGGGAGGAACACAGAGTTTGCCTTCATGCTCTCCCAAAATACCCCTTATTGCCAATGATAGGGTAAACCTGGCTGTCAAGCTGCAGCTCTGGTGTAGTGGCTGCCACACATTCCTCTATGAGCAACAGCAAGGGTTGGTGGGACTTCTGCTCCACTGCCGCCCATATTGGCATGAACGAGCCCAGGGGGATGACGTTGGTCTTTGCTACACTTGTTAATTCCTCTGTAGGGGAAGTAAAAAAGGATTAGAATGGGTCTTTGAGTATCATGTTGTATTTAGTCCTGAGAACTCACCATTGAGGAGTTCCATGTGGAAAACCAGCCTGCCTCGGCCTTCAGAAAAACTGGATCCAGGATTCAGGAAAGTGGGGACCCACCCCTCAGGACTGATTATAAGCACACTCAATGGGATACACAAAGGAAGCAGGTTTGGACTTTTTATTTGGTCTGAAAGTCAGCTCATTTTGATAGAGGAGATGCTTTCCTTTCacctTCTTTTAAACTTGCAGTTAACTAGTTTGTAATTGAACTCTGCTTCCCCCTCTCCGCTGGGCAGAACATTAAATTTAGATGGTAAGCAGCTTCCAAGGAAGAGACGAGCAGCATGTGGCACCAACTCCGCATTGATCCTCCATGTGATCATTATGGAGTCTTGTTCACAGACTACTTTGATAGCTGCAAACAAATTCTCATGACACCAGTTTCTGAAACACTTGACCATAACCAGAAGGTTGACACATTACTACATACACGTGCAAATACTACCTGTATTAGCATCAGTTGTTGCAAAAACAGCCATGATTACCACACCGAGGAAGAGTTGAGCCACCATGACTGAATGATTAAGGTCACATTGGAAGTGACACTATTTGTAGACTTCCTGCCAAATTAGCAGAATGATTAACACCTGTGTGAGAGCAGGGCATCGTTATGCTGGGgtgtttttgtgcattttcAAAATTTAATATTGCAGGGTGTTCATTTTGACAACTTCTAAATGAAAAGGGACATAACTGTAGCCTACCTTTATTCAAGTACTACTCTCACTGGAAAAGAAATAGAGATCGACATTGAGCCCACAGACAAGGTGGAGCGAATAAAAGAGAGGGTGGAGGAGAAGGAAGGGATCCCCCCGCAGCAACAGAGACTCATCTACAGTGGAAAACAGATGAATGATGAGAAGACGGCTGCCGACTACAAGATCCAGGGAGGCTCGGTGCTCCATCTTGTGTTGGCGCTAAGAGGCGGCTCAACGCTCCACGGGCCCTGCATACACCTCTCCTCCTTGTCATGAGTTGATTTTGTCATGGGGCCAGCGAGTGCCAACGCTTTAGGTGTCTGTCACCGTCTAACCATGTTTCAGCACAGAGATCTGAAATCCTACGCTCCTGTgcaaatgcacaaaaaaaaaataaaaaaaataatcaaccaACAACGGCAATAACGAGAAAAAAGGACGTTCTAATTcctttgtaaatgttttttgtaaacCCACATTGGCTTTCTGATTTTGACCAGTTGATGCTGGCACCCACGCAGTACAAAAGACAGTTTGAAAACAGTGTTCTTTTTGCTTGTGAATAAATGCTGAAGTTGA
>XM_039815226.1
CATCACGTCCGGAGTGTTTAGCGTTGTACACAGGAAGTAGCTTCAAGTCTGACAGAGAAGGAGGTTGTAATTTGCAAGTATATCAAGAGTTTTGGTCAGTTAACAGTACATTCAATTTCGAGTTGTTGTACATTGTTTATTCAAGATGCTGATCAAAGTTAAGACTCTCACTGGAAAAGAAATAGAGATCGACATTGAGCCCACAGACAAGGTGGAGCGAATAAAAGAGAGGGTGGAGGAGAAGGAAGGGATCCCCCCGCAGCAACAGAGACTCATCTACAGTGGAAAACAGATGAATGATGAGAAGACGGCTGCCGACTACAAGATCCAGGGAGGCTCGGTGCTCCATCTTGTGTTGGCGCTAAGAGGCGGCTCAACGCTCCACGGGCCCTGCATACACCTCTCCTCCTTGTCATGAGTTGATTTTGTCATGGGGCCAGCGAGTGCCAACGCTTTAGGTGTCTGTCACCGTCTAACCATGTTTCAGCACAGAGATCTGAAATCCTACGCTCCTGTgcaaatgcacaaaaaaaaaataaaaaaaataatcaaccaACAACGGCAATAACGAGAAAAAAGGACGTTCTAATTcctttgtaaatgttttttgtaaacCCACATTGGCTTTCTGATTTTGACCAGTTGATGCTGGCACCCACGCAGTACAAAAGACAGTTTGAAAACAGTGTTCTTTTTGCTTGTGAATAAATGCTGAAGTTGA

Function

NR:

description
PREDICTED: NEDD8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153583 False 2750 lncRNA 0.43 9 12601180 12608569
TU153584 False 709 TUCP 0.44 4 12601180 12602909
TU153585 True 2751 lncRNA 0.43 9 12601180 12608569
XM_039815226.1 False 721 mRNA 0.44 4 12601180 12602921

Neighbor

gene id symbol gene type direction distance location
psmb11a psmb11,LOC102789740,LOC102210751 coding downstream 46554 12553568 ~ 12554626 (-)
psmb5 psmb5,LOC108238608 coding downstream 47609 12546361 ~ 12553571 (-)
LOC120568866 cdh24,LOC102798176 coding downstream 86550 12360983 ~ 12514630 (-)
carmil3 NA coding downstream 273140 12230121 ~ 12328040 (-)
rem2 rem2 coding downstream 393510 12176857 ~ 12207670 (-)
homeza homez coding upstream 8051 12616620 ~ 12621709 (-)
dhrs1 dhrs1 coding upstream 14176 12622745 ~ 12627332 (-)
c11h14orf119 LOC104956585 coding upstream 54626 12663195 ~ 12664701 (-)
mmp14b LOC103360306,LOC103396588 coding upstream 83426 12691995 ~ 12704763 (-)
sall2 LOC104956582,LOC103360303 coding upstream 97605 12706174 ~ 12715746 (-)
LOC120568043 NA non-coding downstream 588 12585529 ~ 12600592 (-)
G113828 NA non-coding downstream 244289 12356334 ~ 12356891 (-)
G113810 NA non-coding downstream 245099 12353843 ~ 12356081 (-)
G113806 NA non-coding downstream 371842 12228979 ~ 12229338 (-)
G113799 NA non-coding downstream 392210 12208532 ~ 12208970 (-)
G113933 NA non-coding upstream 149082 12757651 ~ 12759273 (-)
G113945 NA non-coding upstream 181270 12789839 ~ 12793027 (-)
G114129 col6a1,col6a2 non-coding upstream 344811 12953380 ~ 13167706 (-)
LOC120567923 NA non-coding upstream 414701 13023270 ~ 13039958 (-)
G114131 NA non-coding upstream 473045 13081614 ~ 13084384 (-)
G113805 NA other downstream 382913 12218062 ~ 12218267 (-)
LOC120567758 NA other downstream 1712228 10887007 ~ 10888952 (-)
brinp2 brinp2,LOC103369811 other downstream 2334102 10040686 ~ 10267078 (-)
LOC120568397 NA other downstream 3090683 9400787 ~ 9510497 (-)
chd7 chd7,LOC103370133,LOC102782711 other downstream 3406308 9114384 ~ 9194872 (-)
LOC120568934 LOC104956577 other upstream 152179 12760748 ~ 12768625 (-)
LOC120568578 wdr48 other upstream 357897 12966466 ~ 12975328 (-)
G114152 NA other upstream 475992 13084561 ~ 13088563 (-)
dis3l2 dis3l2 other upstream 860962 13469531 ~ 13482225 (-)
tfr1a NA other upstream 1341302 13949871 ~ 13968811 (-)

Expression


Co-expression Network