G113945


Basic Information

Item Value
gene id G113945
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12789839 ~ 12793027 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU153687
AGCGGTTACAGGAAATAAATGGAGACATTGATATTATGCCCGTCTGTCACAAGATTTTAAGTATAGAGAGGACAAGAACATTTTAATACTATGTTGCCCTCCTTCAACAGTGTTTATTCCACCATCACAGATGAGgtcttgtgtttgtctgtatttggTCTGCTGTAATAAAGTAAGCAACCTCTTTTCACGGCATCGAGTGTGTCACTGGTGTATTGTGTCAGTACGGATTACCAGGTAAAAAGTCTTTGCACATGTTTTGTCATGCATTATTTGTTTCAGATTCCACATTTAGAAAATGCACAGTATTTTCATCAGTAACAGAGAGTGAAAACAGTAAAGTTAAAGCAAACTGATGACTATGGAAAACATACTGACCTTGCAGCTGCTAGAGTGTCTGCCACACATGCATCATTGTTCTGGGTGACACGGACTGCCTGCTCAACCTTTTCCAGCATGTCAGATTTTCCTGCATAAAAAGCCACTATAGGAGCCAGTTTGGCTATTCCATCAATCTGACAGTCGCTCTCACAGCCTGTGGAAAATTACagtagtaatagtatagtaataGTTAGAGCGGTTTCTCTTAGTTATGTCTTAGTTATTGTAATGCCATTACTGCAGATTTACCAGTCTCCTCTTTGCCTGCATCCACATTCTTCAGGAAGCTCTTTAAACTCGCATGTCTCCATGGTCCCTCGATGGGCAGCTGAGGTTTTGGCCCTGGtatacacaacaaacacaacatcaTCAGTATTCCCACCTTACTAAGTGAAAAGAGTTGAATTCATTCTTCTGCAACTACATAAAAGACTTGTCAACTTCTACTGGATAGCTGTCctacctcctctctctctgtaagGATCATTGACAGGCGTGTCATACTCTGATCCAGGCCCAAAGAATTTTAGTGTGCGCTGCTTCAGATCGTCAACATTCTACCTCCACATTCGGACAAGGACTCCAGCAGGACAAAGGCCTGGTCTCCGTAGCAGCTCTGCTGGCCCGTCTGCCTCCTGTAGAAAGGGTTGGCCGACTCAGGGCGGAACTCAGGGTTCGGATCCTGAGCCAGAATCCCCTGCAGCTTCTGCCGATCGTACACCCAGTGGAGGGGCTGCTGCTGCATCTGCAACTGCTGATCCTACAATGGCTCCTATCGCTCTGTTAGACAGAGCTGCAGCCATCTgtaaaaaacattcaaagtaaTATTGGAATTTAGGAAATGGTTATTATTTGTTGATAAAATTGAACGAttgttatttgttattgtaATTAGAGCTGAAACTGTAATGACTGGCAGTTTTGAGTTTATCTGCATTGTACTACCTTTCCTAGATTATCTGAGATGATGTGTAGCCTACAGCTTGAATAATTGATATTAGCTCGGTGTGAGGTAGCTATATTTCAGCAGTAACTAATGTTACCGCTAGTGCTTCATGACTTGAACGCAGCATTGTTTTATCTCGCTAATATTTTTTacgacaacaatggagctccgGCCAGAGGAAATGAAACATGCGCTGATAGATTCGTCTGGTTTCCAGTATAATGACCTAGCTAGACTAAGTAACGTCAGAGGAGATAGCAGTAACGTATTTATAAACAATGTAACGTTAGCGTCACTTAACgatagctaacgtcagctaacgtcAGTCATTAACGTTAGACATAAAGTCTTACCTTAAACTCCGtttaatgtaacgttaacgttatgtACCAACTGACACCCAGGTCACACTGCAGTTTGTTTCAACCCTCGGCAACTCCTGAAGGAAACAATTTACATTTCAATCATCCGTAAAATGAATACAATCTGTGAGGTGTGTTGTTCCTACATGTTATGCATGTTATGAAAGGTTGTTACTTTTAGCACCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153687 True 1875 lncRNA 0.42 4 12789839 12793027

Neighbor

gene id symbol gene type direction distance location
casq1a LOC104956576 coding downstream 3161 12778340 ~ 12786678 (-)
si:rp71-1g18.1 NA coding downstream 15076 12769369 ~ 12774763 (-)
sall2 LOC104956582,LOC103360303 coding downstream 74093 12706174 ~ 12715746 (-)
mmp14b LOC103360306,LOC103396588 coding downstream 85076 12691995 ~ 12704763 (-)
c11h14orf119 LOC104956585 coding downstream 125138 12663195 ~ 12664701 (-)
LOC120568729 LOC104956573,LOC103360293 coding upstream 8879 12801906 ~ 12803940 (-)
LOC120567650 LOC100690777,LOC102314387,LOC101469034,LOC102212652 coding upstream 46556 12839583 ~ 12844436 (-)
hhatla hhatl,LOC108238572,LOC103360290,LOC106926958 coding upstream 53101 12846128 ~ 12854319 (-)
LOC120568154 NA coding upstream 79831 12872858 ~ 12885447 (-)
xirp1 LOC104959684 coding upstream 138371 12931398 ~ 12944718 (-)
G113933 NA non-coding downstream 30566 12757651 ~ 12759273 (-)
LOC120568043 NA non-coding downstream 189247 12585529 ~ 12600592 (-)
G113828 NA non-coding downstream 432948 12356334 ~ 12356891 (-)
G113810 NA non-coding downstream 433758 12353843 ~ 12356081 (-)
G113806 NA non-coding downstream 560501 12228979 ~ 12229338 (-)
G114129 col6a1,col6a2 non-coding upstream 160353 12953380 ~ 13167706 (-)
LOC120567923 NA non-coding upstream 230243 13023270 ~ 13039958 (-)
G114131 NA non-coding upstream 288587 13081614 ~ 13084384 (-)
G114153 LOC105007837 non-coding upstream 295659 13088686 ~ 13091316 (-)
G114130 col6a2,LOC105007837 non-coding upstream 298620 13091647 ~ 13094829 (-)
LOC120568934 LOC104956577 other downstream 21214 12760748 ~ 12768625 (-)
nedd8l LOC104931181,LOC104949953,LOC107384241,LOC103360313 other downstream 181270 12601180 ~ 12608569 (-)
G113805 NA other downstream 571572 12218062 ~ 12218267 (-)
LOC120567758 NA other downstream 1900887 10887007 ~ 10888952 (-)
brinp2 brinp2,LOC103369811 other downstream 2522761 10040686 ~ 10267078 (-)
LOC120568578 wdr48 other upstream 173439 12966466 ~ 12975328 (-)
G114152 NA other upstream 291534 13084561 ~ 13088563 (-)
dis3l2 dis3l2 other upstream 676504 13469531 ~ 13482225 (-)
tfr1a NA other upstream 1156844 13949871 ~ 13968811 (-)
LOC120568687 NA other upstream 1820586 14613613 ~ 14618224 (-)

Expression


Co-expression Network