col6a1 (col6a1)


Basic Information

Item Value
gene id col6a1
gene name col6a1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13010575 ~ 13074594 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU153756
AAAGACCAGATCACAACAGTGCTTCTTATTGAGTTGAATGGACAATAACCTCCACTGCACATGAATCGTGGGAAAGCGGTTTATCCAAGAGATTATCCAGTATGCTTAGGGGCAAGAAGGTCGGAGGGCATTCATCACTAATCTTCTGCTCATGCTCCCCATTTCTGAATGGCTCAGTGGCTAAAGATGATCCTTACCAACTctgcacatcacacatgcacacactcacacacacacacacacacacacacacacacacacacacacacacacacctccgtgCTTCATCAGTCGTGTAGGAAAACATCAGTCATGGTTGaatgctgaaaaaaagaaacctaaTGGGATTTAGCCCctcacacccacatacacacagaaaacagtGTGTACCTTTTTTAGATCCTCTCAGCTGTAAGTTCCACACCTTGTTATTATCTGTGGTGCTATTAGTCTCAGTGTGTCCGCCTCTACCCATGTTGTTAAAGAAGATATTTTTACCTGAGGAACAAAACTTTAGTAGTGTTGTAAGACCTCCTTCAATAAAGGTTGCTACCCCAAGTGTCTCAGCTCACTTTTttcccac
>XM_039815651.1
CCCTGTGGACCTTATAAGGAAGCAGGCATATCTAGGATTCTGTGTACACTTTTGGCTCGTGTGCGTTCTAATCTATTCCTACTAATCTTCCCCAGAGAAAGCGCGTGAACTCtatcctcctccttctcctccccccTCACTGTGCGCTCTGGTCTTCTGCGCGTTCTGTCTCGCCTCGGACAAACTGCGGCGGAGCGCTGGATCACCAAAAGTTTGCCCAATCGGTTTAGAGGTACCGAGTTTGGGGACGGAGTGGTTCGGTGTTGGTTTTTCTGGGGATTTGTGTGTAGTCCCTTTTTTAGTTTCTTTGCAGTTTAACCATGGAGAGTCTTAGAGCTCTCCTCGCGCTGCTGTGCGTTTTTCTGGCTGGAGCGCAAACGCAAATCCAAAGAAACGTGTTTTCGGAATGTCCGGTTGACCTTTTCTTTGTACTGGATACATCTGAGAGTGTCGCCCTCAGACAGAAACCTCCAGAATATTATATTAACCAGCTCAAAGATTTCACCATTGACTTCATAGATGAACTCAAGGAaatGCAGCACCGCTGTGACCGCACCCTGACGTGGAACTCAGGTGCGCTGCACTACAGTGACGAAGTCAAACTTGTACGACATCTGAGTGACATGAGGACTCAACGCGCCGCCCTGAAGGCTGACATCCAAGGCATCGCCTACATCGGCAAGGGCACATATACTGACTGTGCCATCAAGCAGGGCCTTGCTGAGCTGCTCTCCAgCGGCTCCCACTACCAAGACAACAAGTACATCGTGGTTGTGACTGATGGCCATCCTATTACTGGTTACAAGGAGCCATGTGGAGGCGTGCAGGAGGCTGCTAATGAAGCCAAGCAACACAGAGTTAAAGTGTTCGCCGTTGCCATCTCACCTGACCAGGagGACACCAGGCTGTCACTCATTGCCACAGACCCGTCCTACAGACAGAACTTTACTGCTGCAGACGAGTCCAGATCCACCAAGACAAAAACCATTCGTACCATCATCGATATGATCACAAACGAGACAAAGGATGCGTGTTGCTCTTTCGAATGCAATGCTCCAGGAGGGCTTCCAGGACAAAAAGGAGACATTGGCGCTAAGGGAGAAACAGGTAGACCAGGGATGCCAGGAGAGAAAGGAGATGTTGGTGACGTGGGCAACGTTGGAGACCCTGGTCCTGTTGGTTATAGTGGAATGAAGGGAGACCAAGGTGGCAAAGGAGAAAAGGGTGAAAGAGGACACAAAGGCTACAAGGGCGACAAAGGTCAAAGTGGAAGGGACGGAACTGATGGACGCAAGGGTGAACCTGGTTTCCCTGGTCTTTCTGGCTGTAAAGGATCTCCCGGATCAGACGGCAAGCAGGGAGAGCCTGGACCAAAGGGAGACCCTGGCCCTTATGGACAGAAAGGAGGAAAgGGAGATCCTGGAAGAGACGGGGAACCAGGAAGGCCTGGAAACTATGGCCTAATGGGACCTCCGGGTGAGCCGGGCCCTCGCGGAAACAACGGGGACAAAGGAGAGCGCGGTGATGATGGCGCACCTGGACAGGATGGAGCTCGCGGCGAGAGAGGACAAGTTGGAGAGAAGGGCGAGCCAGGTTCCCGTGGAAACAGAGGTCCAAGAGGAGACCCGGGGGAGCCAGGACCCCGTGGAGAGCAGGGGAGGGAGGGCTCAGCTGGCCCCAACGGAGACCCTGGCGAGCCTGGCAGGGTCGGATCTCCTGGCTACAGAGGAGATGAAGGCCCACCTGGACCTGAAGGACCCAAAGGGCCGAGAGGAATCAAAGGAGCTCCGGGAGACAGAGGCCAGCTGGGGGAGAGGGGAGAAGATGGTGTGCCAGGAAATGGCACTGCAGGTTGTCCTGGTTTCCAGGGTTATCCTGGGCCCCGCGGAGACCCTGGTGAGCCGGGTGGCAAAGGAACCCCTGGACCCAAAGGAGATGACGGAGATGCCGGAGATCCAGGCCCCGATaacAACCAACCAGGACCTTTAGGACCTAAAGGGGCCAAAGGTCACAGAGGACCTGAGGGCAATCCGGGACCTCCTGGGCCTCCTGGACCACCAGGAACTGATGAATGTGAAATTCTGGACATCATCATGAAGCTCTGCTCTTGTTGTGAGTGCAAGTGTGCCGCTATGGACCTAGCGTTCATTGTGGACAGCTCAGAGAGTATCGGTGCCACAAACTTTGCTCTCGCCAAAGACTTTATCATCACAGTCATAGACAGACTGACAAAAGACCAGCAACTCAAGTTTGCAGGTAATGACTCTGGGTTGAGTGTAGTCCAGTACAGTGGATCGCAAGCCCAAGAAGTTGTCCGACTGGGCAAGGGGATTGGTAGCCTCCTCGCATTTAAACAgaaAGTGAGAGAAATGAAGTGGCTGGCTGAGGCCACGTACACAGGCGAGGCCCTTGACTATGCTCTGAAGAACACAATCGTTGAAATGACTCATGAGAACAGAGTCGTTATCGTTCTCACGGACGGACGTTCTGATATTTCAAGGGATAAGGTTCCCCTCAACGTACTCTGTGGTAATGATCTCCGGGTGGGTGGTTTAGGAGTGAAGGACTACTCAGGCCGTGAGCCCAACAACGAGCAGCTTGGGGAATTGGTTTGTAAGAATGACCCCAAACCAGGCTTTTCCTTTGTCCTGGACAACTTTGCAGAGCTGTTAGATGACTCTTTCCTGCAGAACCTCACAGCCAGAATCTGTCAAGAAAAGAGGTGCCCTGACTACAAATGTCCCATCTCTTTCTCTGAAAGTGCCGATATTTTGGTGATGATGGACAGCTCGGCCAGTGTGGGCCAGAAGAACTTTCAAACAAGCAAGGCCTTTGTCCACCGCTTGGCCGAGCGTTTCCTGACTAGCGAGAAGAAGCGCGGTGCCACTGTCAGAGTGGGTCTGGGCCAGTACAGCCGAAGCGCCAGCATGGAGCAGGGGCTAACTTCCAATTTGACCGTGCTGTCTCATCACATCGAACAGGCGGCCTTCCAAAATGACGGCACCAACGTGTTAGAAGCCATGGAATTTGCCATGAAGAATTTACGTGGCCGTGGGGATGCATCAGGAGGCAGGAAGAAGCTGGTGCTGTTCTCTGACGGCAGGTCTCAGGCCGTCACCGAGCCCCAGCTGGAGAAGCGTGTTCGTGAGGTGGCGGACGCCGGGGTGGAGCTCTTTGTCATCTCTGTTGGCAGCCAAGTCAATGAGGCCAACCTGCGCACGCTGGTGAGCAGGGGGCGGCGGGACGACATCACCTACGCCCAGCGCCACCTGTTCCGTGTCCCAGACTACGCCTCTCTGCTCCGCGGAGTCTTCCACCAAACCGTCTCCCGCAGGGTGTCCATGCCCTGAGGGAGGGGCCCCCGGACAACAGGACCAACACGCTTTAGATTTTTAGTCCCAATATGAATATTCAGTCTCACTCATTTACCATACACTGTGTTTgagtaaaaccttttttttttaagtctcaCAATATGACGAATGATTGTGTGCCGCGTTATTATGTAACCCACGTaacttgagtggttaaggttaggatagccgattggtcaggggataggacctgaacaaatagggttacgttaccttgcgtaagcatggacgcctggccaacagtagcgtgtgaatgctattgaattCTCTttcctagaagttgcgtgggttccataattaCGCTAGTGTGGCAGACAATGGAAATGTCTTCATGAAATTGCATGAGACCTTATTACCCTGACTTGAGCCTCCGGGGCAGATTGTGTGCCTTTGCTAGGGTCATTAGATGATATCCCAAATGATGGTGCTGACCTAAATAATTTTAGAGTGTTAGAGATTGTTTGACATTACACAACTGGGAGGAATTGCTGCCTGGCAGGCAAAGTTCAGGGTAAAAAATTCCCACTTCAAAGGGGGTTGCTTCGGACCTGGAGAGCCGTCAGTTATGGCCACAACTAAACTACATTTCTAgcttttaaatgcattgagttgaTTCTCCTCAGGTATTCTGCATCACTTTCAGCTAGTGTGTTACTTAAACATATTAGTTTGGTTTGAAAATGGCTAcactctcctgtctctctccaggAATGGAGCTCCTTCCATTCAAACGATTTGTGTTTAGGGTTTAATGTGGAATAATTTTGTAGCTCTTACCACTCTTTGAAGTGGTGTTGGATTTGTGGTGTCACAATTTTACAACGTAAGCATACCAACTGCAGCTGTGGATTGAAAACATACAAATTATTTGGCGAGTTCTTCTGGAACCTAAATGATTGTTAACCTGGAAGGCTGGCGCATGATTGGCCAGTCATCCTTATTTGAGATTTTGCCCCTACAGTATAAAACATATTGAAAAGGTCAGTTGGAAAAGCTAACTTAGTAAAAACTCAAACCCAACTTCACTTGAAAGCTCTATTAGATCACCATACCGACAAAACAGGATATGCCATCAGGCAGACCCCCCAAACAAACCCATCACCTGGTTCTAATGAGGACCCGGCAGCCGGACTCAACATGTGTGATTCTGCCCAAGTGTGTGcatctgtatgtgtgagagtgtgagcgCCTCTGTGTCAACATcaattatgtactgtatatgtatgtggaGGTGATGTTTTATGTGGCGCCTTGGGCGCTTGTTCCATAAACAGCTGTGCTGGGGTCACCGGTTTAAATGACAGAATGACAGAAACCTGTTCTTTGTTGTCTGCGCAGCAGAGAGGCCtctatcaaacacacacacacacacaacacacacacacacacacacacacacacacacacacacacctccgtgCTTCATCAGTCGTGTAGGAAAACATCAGTCATGGTTGaatgctgaaaaaaagaaacctaaTGGGATTTAGCCCctcacacccacatacacacagaaaacagtGTGTACCTTTTTTAGATCCTCTCAGCTGTAAGTTCCACACCTTGTTATTATCTGTGGTGCTATTAGTCTCAGTGTGTCCGCCTCTACCCATGTTGTTAAAGAAGATATTTTTACCTGAGGAACAAAACTTTAGTAGTGTTGTAAGACCTCCTTCAATAAAGGTTGCTACCCCAA

Function

symbol description
col6a1 Acts upstream of or within locomotory behavior and skeletal muscle tissue development. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in caudal fin; dermis; mandibular arch skeleton; muscle; and pleuroperitoneal region. Used to study Bethlem myopathy and congenital muscular dystrophy. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy. Orthologous to human COL6A1 (collagen type VI alpha 1 chain).

NR:

description
collagen alpha-1(VI) chain-like isoform X1

GO: NA

KEGG:

id description
K06238 COL6A; collagen type VI alpha

RNA

RNA id representative length rna type GC content exon number start site end site
TU153756 False 583 lncRNA 0.44 2 13010575 13074594
XM_039815651.1 True 5070 mRNA 0.51 35 13047908 13074569

Neighbor

gene id symbol gene type direction distance location
gorasp1a gorasp1,LOC103360281,LOC104945829 coding upstream 44013 12961268 ~ 12966562 (+)
oxsr1a LOC104927954,LOC103360287,LOC100697833,LOC102210831,LOC102290626 coding upstream 109150 12888543 ~ 12901425 (+)
ctdsplb LOC103360289,LOC102790982 coding upstream 141433 12855102 ~ 12869142 (+)
LOC120567759 vipr1,LOC106517907,LOC107384262 coding upstream 173593 12813318 ~ 12836982 (+)
eif2b5 eif2b5 coding upstream 209505 12795403 ~ 12801070 (+)
col6a2 col6a2 coding downstream 7149 13081743 ~ 13096416 (+)
zgc:162816 LOC103362211,LOC102298354,LOC107097021 coding downstream 26808 13101402 ~ 13105801 (+)
orc2 LOC102787487 coding downstream 32105 13106699 ~ 13112264 (+)
pecr pecr coding downstream 43975 13118569 ~ 13122673 (+)
si:ch211-227n13.3 NA coding downstream 84422 13159016 ~ 13163518 (+)
G113956 NA non-coding upstream 136265 12861625 ~ 12874310 (+)
G113938 NA non-coding upstream 231177 12778340 ~ 12779398 (+)
G113852 NA non-coding upstream 383056 12626079 ~ 12627519 (+)
G113843 LOC104931181,LOC104949953,LOC107384241,LOC103360313 non-coding upstream 407653 12601183 ~ 12602922 (+)
G113811 NA non-coding upstream 653854 12356340 ~ 12356721 (+)
G114008 LOC104953400 non-coding downstream 77505 13152099 ~ 13153594 (+)
G114033 NA non-coding downstream 121667 13196261 ~ 13198734 (+)
G114035 NA non-coding downstream 125174 13199768 ~ 13200746 (+)
G114037 NA non-coding downstream 130231 13204825 ~ 13207023 (+)
LOC120568783 NA non-coding downstream 176157 13250751 ~ 13254585 (+)
G113979 LOC104959684 other upstream 34938 12929215 ~ 12975637 (+)
LOC120569010 NA other upstream 50226 12952548 ~ 12960349 (+)
LOC120567760 LOC103360284,LOC108238605,LOC104963178 other upstream 91377 12911439 ~ 12919198 (+)
LOC120568152 LOC104963178 other upstream 103332 12901539 ~ 12907243 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other upstream 410735 12582642 ~ 12599840 (+)
rpl37a rpl37a,RPL37A other downstream 40002 13114596 ~ 13117356 (+)
ndufb3 ndufb3 other downstream 48436 13123030 ~ 13125463 (+)
si:ch73-71c20.5 NA other downstream 108690 13183284 ~ 13186364 (+)
LOC120568245 LOC103365337,LOC101481118,LOC102206401,LOC102290843 other downstream 1212556 14287150 ~ 14295993 (+)
rgs18 rgs18,LOC106918816,LOC103139989,LOC103479038 other downstream 1911183 14985777 ~ 14993083 (+)

Expression


Co-expression Network