G114000


Basic Information

Item Value
gene id G114000
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13027079 ~ 13028170 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU153760
agtcggcgtgttcctttaacaaagCAACGAGCAAACAGCGCGGAGAGAGTGAGTATTATCACCgaaacaaaaaacagctgatttctAAAGCAAAGTGCAAATCCTCCTTACAAATAACTTCTCTGGCCTAGAGGGCCCTGACGGTTCCCCACTGGTAAACACTGAACCTTAAAGGTGCTGttggtaggattgggaagatccaggacttagccaaaaaatttgaacatcaacaacttctcagtccctatcccctttctgctaaagcccaaaacggtctcctaagcccctccccccacaaaggagaatgaatgcgtgtgcatgaacagtgattaggctcgttcgagatgagccgacttgatcccgacttgctctgacgtcatgcacacgtgggcaacgataacctcacgagaccaaggaggccgcagttctgagacgcaggcagcgcagttgcttttcaccaactgcaagagccaggcggacgcaggcggacccagggcatgctgggaacgccggcctctcagctgatcgaacagctgattggttcagaatcgactcaacatgatgacgttttatataaactttttattgattttgaatcggagggattttaactgtgatttgtctgatttaaaagcttattccttacagaacacatgttgtgtggctgatagttgtgtttaaaagtcagagagactaaatctgttcagattacagatcatctacagtctgttgttaattaaaattagcaacagatcgcatgtagagaattttgacagctactctgtcataataaaaccaactggagactgtgtaggagctgatatatgggtctgataacatttattAAATCCGAATTGGACcaccagtgtttctgtcacttcctgttcagcctgaaggctgctggaaaaggctggaaaactgtccgacttgagagcggatttttgtcatatcccccggctgctgccgcctgctctcttctactttacaggcgaggcgcagttcatctcgaacgagtctactgacacgcagttagaccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153760 True 1037 lncRNA 0.46 2 13027079 13028170

Neighbor

gene id symbol gene type direction distance location
LOC120567919 LOC104962026,LOC103362208,LOC102293788,LOC102208917,LOC101474809 coding upstream 1148 12979093 ~ 13025931 (+)
gorasp1a gorasp1,LOC103360281,LOC104945829 coding upstream 60517 12961268 ~ 12966562 (+)
oxsr1a LOC104927954,LOC103360287,LOC100697833,LOC102210831,LOC102290626 coding upstream 125654 12888543 ~ 12901425 (+)
ctdsplb LOC103360289,LOC102790982 coding upstream 157937 12855102 ~ 12869142 (+)
LOC120567759 vipr1,LOC106517907,LOC107384262 coding upstream 190097 12813318 ~ 12836982 (+)
LOC120567922 NA coding downstream 5269 13033439 ~ 13037812 (+)
LOC120567921 LOC103362241,LOC104934209,LOC101483427 coding downstream 10720 13038890 ~ 13045691 (+)
col6a2 col6a2 coding downstream 53573 13081743 ~ 13096416 (+)
zgc:162816 LOC103362211,LOC102298354,LOC107097021 coding downstream 73232 13101402 ~ 13105801 (+)
orc2 LOC102787487 coding downstream 78529 13106699 ~ 13112264 (+)
G113956 NA non-coding upstream 152769 12861625 ~ 12874310 (+)
G113938 NA non-coding upstream 247681 12778340 ~ 12779398 (+)
G113852 NA non-coding upstream 399560 12626079 ~ 12627519 (+)
G113843 LOC104931181,LOC104949953,LOC107384241,LOC103360313 non-coding upstream 424157 12601183 ~ 12602922 (+)
G113811 NA non-coding upstream 670358 12356340 ~ 12356721 (+)
G114008 LOC104953400 non-coding downstream 123929 13152099 ~ 13153594 (+)
G114033 NA non-coding downstream 168091 13196261 ~ 13198734 (+)
G114035 NA non-coding downstream 171598 13199768 ~ 13200746 (+)
G114037 NA non-coding downstream 176655 13204825 ~ 13207023 (+)
LOC120568783 NA non-coding downstream 222581 13250751 ~ 13254585 (+)
G113979 LOC104959684 other upstream 51442 12929215 ~ 12975637 (+)
LOC120569010 NA other upstream 66730 12952548 ~ 12960349 (+)
LOC120567760 LOC103360284,LOC108238605,LOC104963178 other upstream 107881 12911439 ~ 12919198 (+)
LOC120568152 LOC104963178 other upstream 119836 12901539 ~ 12907243 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other upstream 427239 12582642 ~ 12599840 (+)
rpl37a rpl37a,RPL37A other downstream 86426 13114596 ~ 13117356 (+)
ndufb3 ndufb3 other downstream 94860 13123030 ~ 13125463 (+)
si:ch73-71c20.5 NA other downstream 155114 13183284 ~ 13186364 (+)
LOC120568245 LOC103365337,LOC101481118,LOC102206401,LOC102290843 other downstream 1258980 14287150 ~ 14295993 (+)
rgs18 rgs18,LOC106918816,LOC103139989,LOC103479038 other downstream 1957607 14985777 ~ 14993083 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01017364_00000827_00001255 NA coding CI01017364 null 827 ~ 1361 (+)