G114129 (col6a1,col6a2)


Basic Information

Item Value
gene id G114129
gene name col6a1,col6a2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12953380 ~ 13167706 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU153934
tgtgtgtgtgggagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagagagagcgacacactgcaaactgaaattcgatacaaaataaaaccaaaataaagCGTACAATTAGTTTCGTACACATTCATTCACCCTTCTCTGGGATACTTTTGAGTGTCTTTAGTTGGAAGGGCTGACCAATTTAGAATTAATATAACAATCAAGttacaaatgtgtttgtgtgagtgtgcaacTGGTCCTACATTGTATTGGCTTCTGTAAATTAATCTTCACCCATAACAACAGGATATGTAGCCGCCTCAGTGCCTTACATCCAGTTATAAATGATCACAGAGGTTTGCtgatggctctgtgtgtgtttacgtgtACGCTGAAGGAGCTGGCCCTTCTTTAAATGGGTTCTAATTGTATGGAGAGAGTTACAGTTCCTCACTAGCATATCCAGCGGATAAAGCGCTCAAAGAATGAGGGTTTGTTCAGCATGCTGTAGTCAGCTCCTCTAAAGACGGCAGACATGTCCCCAAGCGACACCTTCCGCAGCACCTCTTCATCTGTGTCTGTTCCCATGGCGATGACCGTGGGAACGCCTTCCGCTCGCTTCATAGCAGACAAGCCCTCATCCAGCTGCTCACTGGCTGTGATGCCATCAGTGATGAACACAAAGGCCAGCTCAGCGTTGCGACGAGCCAAGCGTTCA
>TU153937
tttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtttgatagaGGCCTCTCTGCTGCGCAGACAACAAAGAACAGGTTTCTGTCATTCTGTCATTTAAACCGGTGACCCCAGCACAGCTGTTTATGGAACAAGCGCCCAAGGCGCCACATAAAACATCACCtccacatacatatacagtacataattgATGTTGACACAGAGGcgctcacactctcacacatacagatgCACACACTTGGGCAGAATCACACATGTTGAGTCCGGCTGCCGGGTCCTCATTAGAACCAGGTGATGGGTTTGTTTGGGGGGTCTGCCTGATGGCATATCCTGTTTTGTCGGTATGGTGATCTAATAGAGCTTTCAAGTGAAGTTGGGTTTGAGTTTTTACTAAGTTAGCTTTTCCAACTGACCTTTTCAATATGTTTTATACTGTAGGGGCAAAATCTCAAATAAGGATGACTGGCCAATCATGCGCCAGCCTTCCAGGTTAACAATCATTTAGGTTCCAGAAGAACTCGCCAAATAATTTGTATGTTTTCAATCCACAGCTGCAGTTGGTATGCTTACGTTGTAAAATTGTGACACCACAAATCCAACACCACTTCAAAGAGTGGTAAGAGCTACAAAATTATTCCACATTAAACCCTAAACACAAATCGTTTGAATGGAAGGAGCTCCATTcctggagagagacaggagagtgTAGCCATTTTCAAACCAAACTAATATGTTTAAGTAACACACTAGCTGAAAGTGATGCAGAATACCTGAGGAGAAtcaactcaatgcatttaaaagcTAGAAATGTAGTTTAGTTGTGGCCATAACTGACGGCTCTCCAGGTCCGAAGCAACCCCCTTTGAAGTGGGAATTTTTTACCCTGAACTTTGCCTGCCAGGCAGCAATTCCTCCCAGTTGTGTAATGTCAAACAATCTCTAACACTCTAAAATTATTTAGGTCAGCACCATCATTTGGGATATCATCTAATGACCCTAGCAAAGGCACACAATCTGCCCCGGAGGCTCAAGTCAGGGTAATAAGGTCTCATGCAATTTCATGAAGACATTTCCATTGTCTGCCACACTAGCGtaattatggaacccacgcaacttctaggaaAGAGaattcaatagcattcacacgctactgttggccaggcgtccatgcttacgcaaggtaacgtaaccctatttgttcaggtcctatcccctgaccaatcggctatcctaaccttaaccactcaagttACGTGGGTTACATAATAACGCGGCACACAATCATTCGTCATATTGtgagacttaaaaaaaaaaggttttactcAAACACAGTGTATGGTAAATGAGTGAGACTGAATATTCATATTGGGACTAAAAATCTAAAGCGTGTTGGTCCTGTTGTCCGGGGGCCCCTCCCTCAGGGCATGGACACCCTGCGGGAGACGGTTTGGTGGAAGACTCCGCGGAGCAGAGAGGCGTAGTCTGGGACACGGAACAGGTGGCGCTGGGCGTAGGTGATGTCGTCCCGCCGCCCCCTGCTCACCAGCGTGCGCAGGTTGGCCTCATTGACTTGGCTGCCAACAGAGATGACAAAGAGCTCCACCCCGGCGTCCGCCACCTCACGAACACGCTTCTCCAGCTGGGGCTCGGTGACGGCCTGAGACCTGCCGTCAGAGAACAGCACCAGCTTCTTCCTGCCTCCTGATGCATCCCCACGGCCACGTAAATTCTTCATGGCAAATTCCATGGCTTCTAACACGTTGGTGCCGTCATTTTGGAAGGCCGCCTGTTCGATGTGATGAGACAGCACGGTCAAATTGGAAGTTAGCCCCTGCTCCATGCTGGCGCTTCGGCTGTACTGGCCCAGACCCACTCTGACAGTGGCACCGCGCTTCTTCTCGCTAGTCAGGAAACGCTCGGCCAAGCGGTGGACAAAGGCCTTGCTTGTTTGAAAGTTCTTCTGGCCCACACTGGCCGAGCTGTCCATCATCACCAAAATATCGGCACTTTCAGAGAAAGAGA
>TU153940
GGGTAACCACATAATGGTTTATTTGGAATTCATGTTTACAGATTTGGttcttttatgtttgtctgtcaaATCATGTGTAAATAACTACAGcatatgtgtgtgcctgtgtgtgattCTTATGTGGCTGAGTGTAGGACATTACCGTAATGTGAGATTCTATTTCCCCCTGAAGAAGATATGTCTACATGATTCCCCCCTGAAACAAACTACAGTAATTACAGCATAAcatgatgtaaaaaaaagttttcagaaCCACTGGCATGGCTTTGTCCTTTATCTCTACTTTAGCACCGTTAAAGTAAATACTGACTTTGTGAagacagactgtgtgtgtgtgtgtgtgtgtgtgtgtgaaagagagagcgacacactgcaaactgaaattcgatacaaaataaaaccaaaataaagCGTACAATTAGTTTCGTACACATTCATTCACCCTTCTCTGGGATACTTTTGAGTGTCTTTAGTTGGAAGGGCTGACCAATTTAGAATTAATATAACAATCAAGttacaaatgtgtttgtgtgagtgtgcaacTGGTCCTACATTGTATTGGCTTCTGTAAATTAATCTTCACCCATAACAACAGGATATGTAGCCGCCTCAGTGCCTTACATCCAGTTATAAATGATCACAGAGGTTTGCtgatggctctgtgtgtgtttacgtgtACGCTGAAGGAGCTGGCCCTTCTTTAAATGGGTTCTAATTGTATGGAGAGAGTTACAGTTCCTCACTAGCATATCCAGCGGATAAAGCGCTCAAAGAATGAGGGTTTGTTCAGCATGCTGTAGTCAGCTCCTCTAAAGACGGCAGACATGTCCCCAAGCGACACCTTCCGCAGCACCTCTTCATCTGTGTCTGTTCCCATGGCGATGACCGTGGGAACGCCTTCCGCTCGCTTCATAGCAGACAAGCCCTCATCCAGCTGCTCACTGGCTGTGATGCCATCAGTGATGAACACAAAGGCCAGCTCAGCGTTGCGACGAGCCAAGCGTTCA
>TU153942
CTTGGGGTAGCAACCTTTATTGAAGGAGGTCTTACAACACTACTAAAGTTTTGTTCCTCAGGTAAAAATATCTTCTTTAACAACATGGGTAGAGGCGGACACACTGAGACTAATAGCACCACAGATAATAACAAGGTGTGGAACTTACAGCTGAGAGGATCTAAAAAAGGTACACactgttttctgtgtgtatgtgggtgtgagGGGCTAAATCCCAttaggtttctttttttcagcattCAACCATGACTGATGTTTTCCTACACGACTGATGAAGcacggaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgcactCGAAGTGAGCAACTTCCTGGATCCATCAACAAATAAGAGGTGTCTTGTGCCCTTACAATGTTTACACAATAGAACCCCGTGCTGCATAAGCAGTTAGGTGTAAAAGGATTTGGCTCAGCTGAAAAACATCTGCATGGCTGTAATAAAATGACAGTATTTCCAATGAATGCTGCATTGCAGTATTATTGCTGCCTCTTGTCCCAATTATATCACATGTATTACATCTAATATCTGACAGAGTGGAGAGACTGTTCATTTGTATCCTCTGAGACCACATCAATAGTTTAAAGGTTCAAAGCAGCAAAAGCACGTAGTTCACGTGCG

Function

symbol description
col6a1 Acts upstream of or within locomotory behavior and skeletal muscle tissue development. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in caudal fin; dermis; mandibular arch skeleton; muscle; and pleuroperitoneal region. Used to study Bethlem myopathy and congenital muscular dystrophy. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy. Orthologous to human COL6A1 (collagen type VI alpha 1 chain).
col6a2 Acts upstream of or within axonogenesis; muscle cell development; and muscle organ development. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including anterior segment eye; gut; integument; musculature system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy. Orthologous to human COL6A2 (collagen type VI alpha 2 chain).

NR:

description
PREDICTED: collagen alpha-1(VI) chain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153934 False 698 lncRNA 0.46 2 13095333 13164835
TU153937 True 2048 lncRNA 0.48 2 13072245 13167706
TU153940 False 1007 lncRNA 0.43 2 13095333 13096368
TU153942 False 721 lncRNA 0.42 3 12953380 13074570

Neighbor

gene id symbol gene type direction distance location
xirp1 LOC104959684 coding downstream 8662 12931398 ~ 12944718 (-)
LOC120568154 NA coding downstream 67933 12872858 ~ 12885447 (-)
hhatla hhatl,LOC108238572,LOC103360290,LOC106926958 coding downstream 99061 12846128 ~ 12854319 (-)
LOC120567650 LOC100690777,LOC102314387,LOC101469034,LOC102212652 coding downstream 108944 12839583 ~ 12844436 (-)
LOC120568729 LOC104956573,LOC103360293 coding downstream 149440 12801906 ~ 12803940 (-)
tmbim1a tmbim1 coding upstream 18548 13186254 ~ 13195957 (-)
casp8 NA coding upstream 29033 13196739 ~ 13207620 (-)
LOC120568680 catip coding upstream 40324 13208030 ~ 13214290 (-)
LOC120568677 NA coding upstream 47174 13214880 ~ 13218070 (-)
LOC120567607 LOC104935780 coding upstream 57191 13224897 ~ 13230904 (-)
G113945 NA non-coding downstream 160353 12789839 ~ 12793027 (-)
G113933 NA non-coding downstream 194107 12757651 ~ 12759273 (-)
LOC120568043 NA non-coding downstream 352788 12585529 ~ 12600592 (-)
G113828 NA non-coding downstream 596489 12356334 ~ 12356891 (-)
G113810 NA non-coding downstream 597299 12353843 ~ 12356081 (-)
G114177 NA non-coding upstream 9097 13176803 ~ 13177751 (-)
G114183 NA non-coding upstream 30039 13197745 ~ 13223865 (-)
G114196 lect1 non-coding upstream 113225 13280931 ~ 13286164 (-)
G114199 NA non-coding upstream 118945 13286651 ~ 13287220 (-)
G114202 NA non-coding upstream 120476 13288182 ~ 13288993 (-)
LOC120568934 LOC104956577 other downstream 184755 12760748 ~ 12768625 (-)
nedd8l LOC104931181,LOC104949953,LOC107384241,LOC103360313 other downstream 344811 12601180 ~ 12608569 (-)
G113805 NA other downstream 735113 12218062 ~ 12218267 (-)
LOC120567758 NA other downstream 2064428 10887007 ~ 10888952 (-)
brinp2 brinp2,LOC103369811 other downstream 2686302 10040686 ~ 10267078 (-)
dis3l2 dis3l2 other upstream 301825 13469531 ~ 13482225 (-)
tfr1a NA other upstream 782165 13949871 ~ 13968811 (-)
LOC120568687 NA other upstream 1445907 14613613 ~ 14618224 (-)
G114680 NA other upstream 1628212 14795918 ~ 14797044 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other upstream 2122376 15290082 ~ 15304610 (-)

Expression


Co-expression Network