Gene
RNA
| Item | Value |
|---|---|
| gene id | G114130 |
| gene name | col6a2,LOC105007837 |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053122.1 |
| NCBI id | CM020919.1 |
| chromosome length | 39550354 |
| location | 13091647 ~ 13094829 (-) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| col6a2 | Acts upstream of or within axonogenesis; muscle cell development; and muscle organ development. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including anterior segment eye; gut; integument; musculature system; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Ullrich congenital muscular dystrophy. Orthologous to human COL6A2 (collagen type VI alpha 2 chain). |
| description |
|---|
| PREDICTED: collagen alpha-2(VI) chain |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU153944 | True | 910 | lncRNA | 0.51 | 4 | 13091647 | 13094829 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| xirp1 | LOC104959684 | coding | downstream | 146929 | 12931398 ~ 12944718 (-) |
| LOC120568154 | NA | coding | downstream | 206200 | 12872858 ~ 12885447 (-) |
| hhatla | hhatl,LOC108238572,LOC103360290,LOC106926958 | coding | downstream | 237328 | 12846128 ~ 12854319 (-) |
| LOC120567650 | LOC100690777,LOC102314387,LOC101469034,LOC102212652 | coding | downstream | 247211 | 12839583 ~ 12844436 (-) |
| LOC120568729 | LOC104956573,LOC103360293 | coding | downstream | 287707 | 12801906 ~ 12803940 (-) |
| cfap410 | cunh21orf2,LOC102788189 | coding | upstream | 17534 | 13112363 ~ 13115289 (-) |
| LOC120568264 | LOC104953400 | coding | upstream | 38103 | 13132932 ~ 13151478 (-) |
| LOC120568263 | LOC104953400 | coding | upstream | 57266 | 13152095 ~ 13158290 (-) |
| tmbim1a | tmbim1 | coding | upstream | 91425 | 13186254 ~ 13195957 (-) |
| casp8 | NA | coding | upstream | 101910 | 13196739 ~ 13207620 (-) |
| G114153 | LOC105007837 | non-coding | downstream | 331 | 13088686 ~ 13091316 (-) |
| G114131 | NA | non-coding | downstream | 7263 | 13081614 ~ 13084384 (-) |
| LOC120567923 | NA | non-coding | downstream | 51689 | 13023270 ~ 13039958 (-) |
| G113945 | NA | non-coding | downstream | 298620 | 12789839 ~ 12793027 (-) |
| G113933 | NA | non-coding | downstream | 332374 | 12757651 ~ 12759273 (-) |
| G114159 | NA | non-coding | upstream | 8413 | 13103242 ~ 13104397 (-) |
| G114166 | rpl37a,RPL37A | non-coding | upstream | 19816 | 13114645 ~ 13117450 (-) |
| G114177 | NA | non-coding | upstream | 81974 | 13176803 ~ 13177751 (-) |
| G114183 | NA | non-coding | upstream | 102916 | 13197745 ~ 13223865 (-) |
| G114196 | lect1 | non-coding | upstream | 186102 | 13280931 ~ 13286164 (-) |
| G114152 | NA | other | downstream | 3084 | 13084561 ~ 13088563 (-) |
| LOC120568578 | wdr48 | other | downstream | 116319 | 12966466 ~ 12975328 (-) |
| LOC120568934 | LOC104956577 | other | downstream | 323022 | 12760748 ~ 12768625 (-) |
| nedd8l | LOC104931181,LOC104949953,LOC107384241,LOC103360313 | other | downstream | 483078 | 12601180 ~ 12608569 (-) |
| G113805 | NA | other | downstream | 873380 | 12218062 ~ 12218267 (-) |
| dis3l2 | dis3l2 | other | upstream | 374702 | 13469531 ~ 13482225 (-) |
| tfr1a | NA | other | upstream | 855042 | 13949871 ~ 13968811 (-) |
| LOC120568687 | NA | other | upstream | 1518784 | 14613613 ~ 14618224 (-) |
| G114680 | NA | other | upstream | 1701089 | 14795918 ~ 14797044 (-) |
| mfsd8l2 | LOC102304717,LOC102799006,LOC108238243,LOC103479065 | other | upstream | 2195253 | 15290082 ~ 15304610 (-) |
