LOC120568578 (wdr48)


Basic Information

Item Value
gene id LOC120568578
gene name wdr48
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12966466 ~ 12975328 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU153955
GCAGACCACCAGCTCCTCAACCAACGATAAGCCGGGGGagcaggagaaggaggaggacatGGCAATGCTAGCCGAGGAGAAGATCGAACTAATGTGTCAAGACCAGGTGCTAGATCCCAACATGGACCTGCGAACAGTTAAACATTTTATCTGGAAGAGCGGAGGGGACTTGACGCTTCACTATAGGCAGAAGTCCACGTGAAAATCCTGATTTTTAAAACAAGAACTCTTCGTCATTTGCCAATCACCACCCACCTCTGACATGTAGTACCCTAAACCCTATTGTGTGGTCAGGAGTCACGGTATCAATGAGAATCCAGTAAAATTTGTGAGGACTCATGGTGTATCATAGGGAACCGACCAGAACAGGCCGGAGCAGCCAGGACACCTGGGAGAGAAGTGGTCCGTagtttcttctgtttttttgttgtttttttttcggtttGAAGAAAAGGACTCTGTTTCTCCAGCGCTCaccaatttcttttctttttactttgacTGCAGTTTGTTCTTTCCTTCTGATTggcgttttattttgaagcgaCTGAAGTTACAGTACTTGTTTGTGTCTgagcgtgtgtgtatatgcacatGGATGTAGTAGACTTGTTTGTTCGTTCTAGTACATTCCAGAAACGGTCCTTGTTCTACAAATACTTCACACCCGTCTCAGCAGTATCAGCAGTTTAGGAGTGCACTTGGACTCTGGGTAGTGTCAGCAGTCCCTCAAAGCAATCCTCTGTTCTTCTGTCATCTTAACTTGAACTTAACCTTAACTTAGACACAGAATTATTGCAGAGCCTGAACCTCATTGACAGAAGCGCTTGTCTTTGTCAATTATTTTAGCTGTTCTCAATGGActgaatgttatttttttgtaaatatatgtACAACATTTTTGATTTAAGTGACTGTTTTCTTTTGGTTTtgcagctgtttttattttgttgttgtacaGTTTACTTAAAACCAACACTTACTTTTTCCAAATCCCTGGAGCACATTAATGAAGGTAATTTGACTTGatgttaaaaatgacatttgttgcattttactCTTTAAGAATGCTAGTAGTCGTCCAAGTCATCTTAGCAATCGGGAAATTATATATAAAGGTATATATCTTTAATAACTCATGCTTACCACTCTGCGCTTGGGTCACGAGCAGTGACTTTTATGACAGTGAGGGCTGTTCCTAATGTATATTTCATTTAGAGTTAATAGGAGTTCAATGAAACAAGAATATAACTTGAAGGGTAATCTCATTCAAGAGAATATGACTTTTCAACCACTGTGGGGAATTTaccaaactaaaataaaacataatacccatttctctctttgtgtcaCCAAGCAGAACAACAGATCTTTTCAGTGTAAATTTTCTAAAGTTAATTTTGCCatcaaagagtgtgtgtgtaacgcCATAGTGGGAACGCATCGAGTGAGCTCTAATTGGCCAAGAACATGATGGGTACCATAATTAGGCCATAACACTGCAATACCCcttgttgtaataatttgtgaaatatgtatattttagGCATTCAAATAAATGAATTGGAATGGTTTAACATTGACAGATTTATGGGAATTATAAATGGATGTTTCTTGAGATGTAATGTGTTCAGCTGATGACTGTGAAAAACAAGGGACAATTTCTTTTTAAGTCAAGTGATATGATTGTTTAACCATCAAAGATTCACCCATTTCACATTCATCAACAAATACTGCACTCATTCCTAATAAAACGTACA
>XM_039816177.1
ttgtccggATGTAGCATCACATGAATTGACTGTCAACATGCAAGATGGCCACGCATCACAGGCAAAATGCTGCTGGGCGGAGAAAAGTACAGGTGTCCTATGTCATTAGAGATGAGGTGGAGAAGTACAACCGAAATGGGGTGAATGCACTCCAGCTGGACCCTGCGCTGAACCGGCTCTTCACTGCTGGAAGAGACTCTATCATCCGGATATGGAGTGTCTACCAGCATAAACAGGACCCATACATTGCCTCGATGGAGCATCACACAGACTGGGTTAATGACATAGTTCTCTGTTGCAATGGCAAAACATTGATATCCGCCTCATCAGACACCACAGTCAAAGTATGGAACGCGCATAAAGGCTTCTGTATGTCAACGTTACGAACGCACAAGGACTATGTGAAAGCTCTGGCCTACGCTAAGGACAAGGAGCTTGTGGCATCAGCAGGTCTGGATCGGCAGATCTTTCTTTGGGATGTGAACACACTAACAGCACTCACTGCTTCCAACAACACTGTCACCACCTCATCTCTCAGTGGGAACAAGGACTCTATCTACAGTCTGGCTATGAACCAGATGGGCACAGTCATTGTATCTGGATCCACAGAAAAGgtTCTGAGAGTTTGGGATCCTCGaacatgtgcaaaactgatgaaGCTAAAAGGCCACACAGACAACGTCAAGTCGTTGCTGCTGAATCGAGATGGCACTCAATGCCTGTCGGGCAGTTCAGACGGCACCATCCGCCTGTGGTCGCTCGGCCAGCAGAGGTGCATCGCCACCTACCGGGTGCACGATGAAGGGGTCTGGGCCCTGCAGGTCAATGAGGCCTTTACACATGTCTACTCTGGAGGCAGAGACAAAAAGATCTACTGCACTGACCTACGTAACCCAGACATCCGTGTGCTCATCTGTGAGGAGAAGGCTCCGGTGCTCAAAATGGAGCTGGACAGATCTGCTGACCCACCTCCAGCAATCTGGGTCTCCACCACCAAGTCATCCGTTAATAAATGGtcTCTAAAGGGAATGCACAACTTCCGGTCATCAGGGGAGTATGACAATGACTGCACTACCCCTCTGACACCACTGTGCACTCAGCCAGAACAAGTCATCAAGGGAGGTGCCAGTATCATACAGTGCCACATTCTGAATGACAAGAGACACATACTCACCAAAGATACCAACAACAATGTGGCTTTCTGGGATGTCCTGAAGGCTTGCAAGGGTGAAGACTTGGGGAAAGTGGAGTTCGATGAAGAGATTAAAAAGCGCTTCAAAATGGTCTATGTGCCAAACTGGTTCTCTGTTGATCTGAAAACTGGAatgcTCACTATCACATTAGATGAGAGCGACTGCTTCGCGGCCTGGGTGTCTGCAAAGGACGCTGGGTTTTCAAGCTCCGATGGATCCGACCCAAAGTTGAACCTGGGTGGACTGCTGCTTCAGGCTCTGTTGGAGTTCTGGCCCAGAACTCGCATCAACCCCATGGACGAGGAAGAGAACGAGGTGAACCACGTGAATGGAGAGCAGGAGAACAGGGTCCAGAAAGGAAATGGATATTTCCAAGTGCCACCACACACGCCAGTCATCTTTGGGGAAGCCGGAGGCAGAACTCTATTTAGGTTGCTATGTAGGGATTCAGGTGGAGAGACTGAATCGATGCTGCTGAACGAGACGGTTCCACAGTGGGTTATTGATATAACTGTAGATGTGAGTACAATCATGTTTCCATCTGTATTTGActtaaaatgtaatcaaataaaacaaagccATCAGGATTACAGGTTAAATaAAGATCATCAACCTGAACGATTTCGGCAGACCACCAGCTCCTCAACCAACGATAAGCCGGGGGagcaggagaaggaggaggacatGGCAATGCTAGCCGAGGAGAAGATCGAACTAATGTGTCAAGACCAGGTGCTAGATCCCAACATGGACCTGCGAACAGTTAAACATTTTATCTGGAAGAGCGGAGGGGACTTGACGCTTCACTATAGGCAGAAGTCCACGTGAAAATCCTGATTTTTAAAACAAGAACTCTTCGTCATTTGCCAATCACCACCCACCTCTGACATGTAGTACCCTAAACCCTATTGTGTGGTCAGGAGTCACGGTATCAATGAGAATCCAGTAAAATTTGTGAGGACTCATGGTGTATCATAGGGAACCGACCAGAACAGGCCGGAGCAGCCAGGACACCTGGGAGAGAAGTGGTCCGTagtttcttctgtttttttgttgtttttttttcggtttGAAGAAAAGGACTCTGTTTCTCCAGCGCTCaccaatttcttttctttttactttgacTGCAGTTTGTTCTTTCCTTCTGATTggcgttttattttgaagcgaCTGAAGTTACAGTACTTGTTTGTGTCTgagcgtgtgtgtatatgcacatGGATGTAGTAGACTTGTTTGTTCGTTCTAGTACATTCCAGAAACGGTCCTTGTTCTACAAATACTTCACACCCGTCTCAGCAGTATCAGCAGTTTAGGAGTGCACTTGGACTCTGGGTAGTGTCAGCAGTCCCTCAAAGCAATCCTCTGTTCTTCTGTCATCTTAACTTGAACTTAACCTTAACTTAGACACAGAATTATTGCAGAGCCTGAACCTCATTGACAGAAGCGCTTGTCTTTGTCAATTATTTTAGCTGTTCTCAATGGActgaatgttatttttttgtaaatatatgtACAACATTTTTGATTTAAGTGACTGTTTTCTTTTGGTTTtgcagctgtttttattttgttgttgtacaGTTTACTTAAAACCAACACTTACTTTTTCCAAATCCCTGGAGCACATTAATGAAGGTAATTTGACTTGatgttaaaaatgacatttgttgcattttactCTTTAAGAATGCTAGTAGTCGTCCAAGTCATCTTAGCAATCGGGAAATTATATATAAAGGTATATATCTTTAATAACTCATGCTTACCACTCTGCGCTTGGGTCACGAGCAGTGACTTTTATGACAGTGAGGGCTGTTCCTAATGTATATTTCATTTAGAGTTAATAGGAGTTCAATGAAACAAGAATATAACTTGAAGGGTAATCTCATTCAAGAGAATATGACTTTTCAACCACTGTGGGGAATTTaccaaactaaaataaaacataatacccatttctctctttgtgtcaCCAAGCAGAACAACAGATCTTTTCAGTGTAAATTTTCTAAAGTTAATTTTGCCatcaaagagtgtgtgtgtaacgcCATAGTGGGAACGCATCGAGTGAGCTCTAATTGGCCAAGAACATGATGGGTACCATAATTAGGCCATAACACTGCAATACCCcttgttgtaataatttgtgaaatatgtatattttagGCATTCAAATAAATGAATTGGAATGGTTTAACATTGACAGATTTATGGGAATTATAAATGGATGTTTCTTGAGATGTAATGTGTTCAGCTGATGACTGTGAAAAACAAGGGACAATTTCTTTTTAAGTCAAGTGATATGATTGTTTAACCATCAAAGATTCACCCATTTCACATTCATCAACAAATACTGCACTCATTCCTAATAAAACGTACAATTGATAAAA

Function

symbol description
wdr48 Enables double-stranded DNA binding activity and single-stranded DNA binding activity. Involved in cellular response to DNA damage stimulus; positive regulation of nitrogen compound metabolic process; and protein deubiquitination. Located in nucleus.

NR:

description
PREDICTED: WD repeat-containing protein 48 isoform X1

GO: NA

KEGG:

id description
K15361 WDR48, UAF1; WD repeat-containing protein 48

RNA

RNA id representative length rna type GC content exon number start site end site
TU153955 False 1760 lncRNA 0.38 2 12966476 12968354
XM_039816177.1 True 3589 mRNA 0.44 17 12966466 12975328

Neighbor

gene id symbol gene type direction distance location
xirp1 LOC104959684 coding downstream 21748 12931398 ~ 12944718 (-)
LOC120568154 NA coding downstream 81019 12872858 ~ 12885447 (-)
hhatla hhatl,LOC108238572,LOC103360290,LOC106926958 coding downstream 112147 12846128 ~ 12854319 (-)
LOC120567650 LOC100690777,LOC102314387,LOC101469034,LOC102212652 coding downstream 122030 12839583 ~ 12844436 (-)
LOC120568729 LOC104956573,LOC103360293 coding downstream 162526 12801906 ~ 12803940 (-)
cfap410 cunh21orf2,LOC102788189 coding upstream 137035 13112363 ~ 13115289 (-)
LOC120568264 LOC104953400 coding upstream 157604 13132932 ~ 13151478 (-)
LOC120568263 LOC104953400 coding upstream 176767 13152095 ~ 13158290 (-)
tmbim1a tmbim1 coding upstream 210926 13186254 ~ 13195957 (-)
casp8 NA coding upstream 221411 13196739 ~ 13207620 (-)
G113945 NA non-coding downstream 173439 12789839 ~ 12793027 (-)
G113933 NA non-coding downstream 207193 12757651 ~ 12759273 (-)
LOC120568043 NA non-coding downstream 365874 12585529 ~ 12600592 (-)
G113828 NA non-coding downstream 609575 12356334 ~ 12356891 (-)
G113810 NA non-coding downstream 610385 12353843 ~ 12356081 (-)
LOC120567923 NA non-coding upstream 47942 13023270 ~ 13039958 (-)
G114131 NA non-coding upstream 106286 13081614 ~ 13084384 (-)
G114153 LOC105007837 non-coding upstream 113358 13088686 ~ 13091316 (-)
G114130 col6a2,LOC105007837 non-coding upstream 116319 13091647 ~ 13094829 (-)
G114159 NA non-coding upstream 127914 13103242 ~ 13104397 (-)
LOC120568934 LOC104956577 other downstream 197841 12760748 ~ 12768625 (-)
nedd8l LOC104931181,LOC104949953,LOC107384241,LOC103360313 other downstream 357897 12601180 ~ 12608569 (-)
G113805 NA other downstream 748199 12218062 ~ 12218267 (-)
LOC120567758 NA other downstream 2077514 10887007 ~ 10888952 (-)
brinp2 brinp2,LOC103369811 other downstream 2699388 10040686 ~ 10267078 (-)
G114152 NA other upstream 109233 13084561 ~ 13088563 (-)
dis3l2 dis3l2 other upstream 494203 13469531 ~ 13482225 (-)
tfr1a NA other upstream 974543 13949871 ~ 13968811 (-)
LOC120568687 NA other upstream 1638285 14613613 ~ 14618224 (-)
G114680 NA other upstream 1820590 14795918 ~ 14797044 (-)

Expression


Co-expression Network