G114153 (LOC105007837)


Basic Information

Item Value
gene id G114153
gene name LOC105007837
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13088686 ~ 13091316 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU153974
GTCTGAATTAGGGTCTTTGGCAAGGGATCCCAGTTTGTTGATGGTGTTGATGACAAAGTTCTTCTCCAGGGTGAAGTTGGTCATACCCACTGACTCGGAGCTGTCGATCACAAACACAATGTCCAGGGCTCCGCATTGTTTCTCACAATCACAGCAGCCACATGTTTCCCTGATGTAGTTCATAACATCACATTcAGTGAGGCCGGGATCTCCCTCAGGGCCAGGATCTCCATCACGCCCAAGCTCTCCTCTTGGCCCTCTTAGGCCAGGTTCACCCTGAGATCCTGGCTCACCGTCCTCTCCCAAAGGTCCTTTAACTCCTGGTTCACCCTTTGGACCACAGTCTCCTCTGCCACCGCGAGGTCCACGATTGccattctctcctctctcaccCGATGATCCTCTAGGCCCAGGATAGCTGAAACCAGGTCTTCCAGGGTCTCCCTTTGGTCCAATCTGTCCAGGATCGCCTCTTGGTCCAGCATCACCAGGGTCACCTCTGGTACCATTTTTCCCAGCCTCTCCTGGTGTCCCCGGTGGTCCCCTGGGGCCTGGCAGGCCATTGTCTCCCTTTGTTCCTTTGTTTCCGGATTCACCTGGAAGTCCTCTCAAGCCTTCTGGCCCCATTTCACCCTTGTCTCCCTTAACTCCATCTGACCCTTGAGCACCCTTTGGCCCATAGTCTCCTCTTCTCCCCGGTTCTCCTCTGACTCCTGGATCTCCAGGGGTTCCtgGGTTTCCTTTCAGTCCAGGGACGCCAGGTGATCCAGgacttcccctctctccCTTTGGTCCAGTCTCTCCAGACAGGCCAGAGGGACCAGGTCTTCCAGGGCGACCGGGATCACCC

Function

NR:

description
PREDICTED: collagen alpha-2(VI) chain isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU153974 True 850 lncRNA 0.56 13 13088686 13091316

Neighbor

gene id symbol gene type direction distance location
xirp1 LOC104959684 coding downstream 143968 12931398 ~ 12944718 (-)
LOC120568154 NA coding downstream 203239 12872858 ~ 12885447 (-)
hhatla hhatl,LOC108238572,LOC103360290,LOC106926958 coding downstream 234367 12846128 ~ 12854319 (-)
LOC120567650 LOC100690777,LOC102314387,LOC101469034,LOC102212652 coding downstream 244250 12839583 ~ 12844436 (-)
LOC120568729 LOC104956573,LOC103360293 coding downstream 284746 12801906 ~ 12803940 (-)
cfap410 cunh21orf2,LOC102788189 coding upstream 21047 13112363 ~ 13115289 (-)
LOC120568264 LOC104953400 coding upstream 41616 13132932 ~ 13151478 (-)
LOC120568263 LOC104953400 coding upstream 60779 13152095 ~ 13158290 (-)
tmbim1a tmbim1 coding upstream 94938 13186254 ~ 13195957 (-)
casp8 NA coding upstream 105423 13196739 ~ 13207620 (-)
G114131 NA non-coding downstream 4302 13081614 ~ 13084384 (-)
LOC120567923 NA non-coding downstream 48728 13023270 ~ 13039958 (-)
G113945 NA non-coding downstream 295659 12789839 ~ 12793027 (-)
G113933 NA non-coding downstream 329413 12757651 ~ 12759273 (-)
LOC120568043 NA non-coding downstream 488094 12585529 ~ 12600592 (-)
G114130 col6a2,LOC105007837 non-coding upstream 331 13091647 ~ 13094829 (-)
G114159 NA non-coding upstream 11926 13103242 ~ 13104397 (-)
G114166 rpl37a,RPL37A non-coding upstream 23329 13114645 ~ 13117450 (-)
G114177 NA non-coding upstream 85487 13176803 ~ 13177751 (-)
G114183 NA non-coding upstream 106429 13197745 ~ 13223865 (-)
G114152 NA other downstream 123 13084561 ~ 13088563 (-)
LOC120568578 wdr48 other downstream 113358 12966466 ~ 12975328 (-)
LOC120568934 LOC104956577 other downstream 320061 12760748 ~ 12768625 (-)
nedd8l LOC104931181,LOC104949953,LOC107384241,LOC103360313 other downstream 480117 12601180 ~ 12608569 (-)
G113805 NA other downstream 870419 12218062 ~ 12218267 (-)
dis3l2 dis3l2 other upstream 378215 13469531 ~ 13482225 (-)
tfr1a NA other upstream 858555 13949871 ~ 13968811 (-)
LOC120568687 NA other upstream 1522297 14613613 ~ 14618224 (-)
G114680 NA other upstream 1704602 14795918 ~ 14797044 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other upstream 2198766 15290082 ~ 15304610 (-)

Expression


Co-expression Network