G114456 (c8a)


Basic Information

Item Value
gene id G114456
gene name c8a
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14049494 ~ 14055523 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU154384
TAAAGGGATTGTGGAGGAGCAGCtttttattcattaaaaaacattttgattatGCTTAATTAGCACTCAACAACATTTTCACCCTGGAACGGGAGCGACTTTAACAGCGCCGAGTCTGAAAGGAGGAGCCCAGGCAGGTTGCTCCGCCCCCATCAGGTGCAGGATTATCACAGGTTCTTGTCCGAGTCTTCCTCTCCGATCCACAGGAAGACCAGGCCCCCCAGCACGACCACGACCCATCTGTCTTGGTATCTGTCGAGGAAAAGTGTAGGGAGTTTAAAGCTGCAGTTTAAAAAGCATATAGATTTAGAAACAGGATATGTCATTACTCCATCACATCCTCTGACCCAAGGAGCAAGTGAAACATGCAGCTTGTAAGTCTCTGACGGAAAATATATTCTATACAGTCTACTGTAACACTATAGTCCCTTTCAATCTGTTCAAGAAAACACTCCTGCCCATGTGCGAGAAATTGTTACGGTTTGCACTTGTTTTGCACtttttactcctctacatttcaCTGACAGCTGTAATTACCTGTTACTTCACAAAAAAAGGTCTGGATGCATTAGATCACCTGCAACATGATCTATAATTATCAAAGACAttcttttaaagtaaaattattttaatggAATATGTATCCTTTAtggttttatttaaagaaatagtttgacattttgggaaatatgcttatttgcctGGCAACCTCGCACACACCCAGCGAAGAAGCttgttgtttttacaattttcagtttttgtgcAGAAtaaattagtgagctttagggGTGCTGGTAGTCCGATTTCtttttacctttggacagagcaagACCAGCTGTTTCCTACTGCTTTgattctttatgctaagctaagctaactgtgtCCTGTCCAACTTCATATGCAACAGACAATTATGAGTGgtgttgatcttctcatctaactctcagctaGAAAGTGAATAATCGTAtaacccaaaatgtcaaaatattcctttatttaaGGAAATTATTTGAATGTGTTTACCACTGTTTTCACTTATGACAAAAGTCTCACCTCTTCTGAGAGTCTCTTCACAGGCCTGTCCATGGAAGCCTGACTTACAGATGCACGTACAGGAGGTACCCGTGAGGACAGGGATGCCGTTGTGCCTGCAGGGGGCGCAGCGGCAGGAGTCAAACTGCTGCTGATACTCATCCCAGCCTCTCTCCAAGTTGGCCAGTCTCGCACCTACATGGTCAGCGGCTGTGCTGAGGCGCACTAGCTCATAAATTGGCATTGTCTGGGTCATAAAGCAGgaaggacagagaaagaaagttaAAAGAAGTAACTAAAAAGTAGGGATGGAATCACCAGAGGAcccacgatacaatattatcacgatacttatgtcacgatgcgatattattgcgattttaaacctattgcgatattctgcgatatattgcaattcattacctgttttccaacttcaaattatgtccccaaagtaaaactttgtcaacatctgttttgtcttaaaataaaaataaaatgtctttggtttgttcatctcacttcaattgtccATCAAGTGGACTGAAAAGCAATTAATCCTATTATTCTAGTACCCAAAGGttaaattctcatgtgcaatttatataataaaagatcaatacttAGCGTCCGTAtttcgatacagtattgccacggaaaatattgcaatactATGCTGCATCAatctcccccccacccctactaaaAAGCAAATGACCACAACAGCAAAGGCACAAAAGCAGTGTGTGGTTATAGATTGAGAAGGTataactttgttttgtttttcttctgttcAGAGCATGTTATGTCAAATCATCTTCCGTTAAGTCACCTCATATTCGATGAGTGCTGGGTTGTATTTGAGGCTCGCTCCCCAGTTTTTGTAGGTGTCAGGGTTCCTGGCCAACAGGccactgctgctgtgtgtgactCCCCCCTTCACTAGAGTAACAATGTCCTCAACCACAGATGAACTAGAGCTCGcgcctGTTTTTTTGCAATCCTTCTCACTAACTTTGAGAGTTGCTGATTTAGTTCCTGTTTCAGTGAAGTAATGGGTTAAACCCAAAGAGGCACCAAAGCAGCTGCCAGCTTCTTCACTGTTAATATCTGTGAGAGTTAGGGAAGAGAATTAAACAAAGGttactttacattacattatctCTTAGATGACATTGATTAACAAACTGAAAAGCCCACAGTACTTGATTTCGCCATAGATGTTTTGTTGACAACCACTACATATTCAAGGGTTCCTCCCATAATTCCCTCTGTGACATAGTGGGTGCCAAATGTGCGGAAGAAGTGGGAGTAACTCCCAAAGTCGTACTGCTCAGGGAGCTCCATGAGTGAAATGTAGAAATCTTCATGAAGCATCAGCTTATTACTTCTCATTTTGAAGTGGGCTGTCTCCACTTTGGACCAAAGCCTAATGAACCCGAGGTCCTGAGGACAAAAAGGCAAGATTTTAAAGAGTAAAgtgatttttcttgttttcagAGGTAGaaatagtaattaaaaaaagtttttataaaACTGTAACTTATTTTTACCTCAAATAATGTCCTTTCTTTTGGCCACAAACATTTATGGTAACACTTTTTAGAGGAGTAAGAAATTTGGGGACATTTTGGTCCTGGGTATTTAAGTTTTAAATATAAGCAGGAGAGtgttagtttagcttagcataaagactgaaaacaggggGAAATAGATGGTCAACTGTTAGCCTGTATGTAAAATCAAATCgattttacactttggtttttgtacagatttaaCCAACAAAACACTGTATAATGTGTTAATCAGCTAGCTTTacaggtgctggtaggcagattttgttaccttttgacagaaccaggctagctGGTTCCCTCTGTTCCAGttttaatgctaagctaagctaagctaagctaactggcttcTGGAGgtatagcttcatatttaatggacagacatgagagtggtcaTCTAATTCTCAGCAAAAGAGCaaacatatttcccaaaatataaaaagaaaaaatcaacAAACTCTGACCTCAAACAATTAATAAtgatatatttaaaacaaacaaaactaattgCACTTGTTATCATGTAGAACATGTTGAACGTTGTCGCCAATAGATCATACCTGGCTTTTATGCTTTGTTATGTTCTCAAAAAACTCAGATTCCTCACTTCCACCCAGTCCCACTTCCACTACATGGATCCCAACTGTGACTCCGGCACTGGAAGAACTCATGGTTTTCCTCGCATTCAGCAGGCTCACCGTATCTTCATAGTATTCGTGAGAGCCCTCAGACGTAGCTTGAGCCTGTACAAGGTTAAACtgtatgtcaaaatgtctttgttCAAACAGTCCATTTATTAAGAAATAAATCACAACATTACCACAAAGCGGTAGGTGTGGTAGTTGTACGGTTTCCTGTAGTTCTTCTCATCTTCATTATAGTGCAGGTTTTCGCAGAATGCGTCATAGATAAATTTCCTCCATTCACCATTATAGACATATTCACACGCTCCTCCAAAGTAACTCGGGTCAAGTACGTGATCCACAAAGTCTCCAGTCAAGACGTTGTAGCTAGGCAAAGTAGAATCATTCAAATGAGTCATTAGGTGAGGATAATAAAGATTAAATGAGACACGTGAAATAAGCAATAGTGTGATTTGGATATTATTTCCAGTGTTTAAAGAGATAGTGCTTTTGATGTGGTTATGCttattgaaattattttttacagGTAACTATGCAGTGTACCTGGTAATTCATTTGCATTGCTTTTAAAACCAGCATCCGTGTGATAAAAAGTGGAAGTAAAGTGGATATCAATAACATTAGTAATAACTCTGCAGTATTTACCCCTGAGTGCCACGTTTAGCACCAGGGATCGGGAGTATGGTGGAACACTTGTCATCTCTCCGGGTGACGTCTTCACAGCCCTCTTCATCAGAGAAATCATCACAGTCTGACTCTCCATTGCAGCGAAGGGACTCGCTGATGCAGCGACCtggatagacagagagacagatgtactgcacatttacacactATCAGACAAAACACCATCAGCTTAAAGAGAATATGTTGTGTGAGCGGTCGTTGGTGGGACTTGCCTGTTTCACGGCAGGTAAAGCTCTCTCCACAGTAATCTGTCACCAGACACGGTGTTGTTACTGTTGGACATGCCTGCTTATCCCACAGTGTCCCAGTGCACTCTGTGCCACCAAACTGTGAGGGCTTCTCAATGTATCGGAAACGGACCCTTTCTGTCTGTGCAAGAGTTACAAGGAGTCCAAGATGACCAGCTCCCCACATTACAGTTGATGGGTATCGGGCTGTTTACAGCTCTGGCCCTCCTCAGCCCAGCCCAACCTGGTATCAGCAGTTGTCCATGACCTCCTGGATGCATTCACAACTGGGCTAAAATTGACAGACAGATGCAGTGTGCATAAAGTCAGgagtaaatgaataaatgtcTCCATACTGAAAATGAGTAGCTAGTCCTTAAGATCAAAATGCCATGACAAAACAGCCGTTGTGTGGTGACTTCTACCACTGCAGCGTTGACCAACCGCAGTGAATGATTG

Function

symbol description
c8a Predicted to act upstream of or within complement activation, classical pathway; cytolysis; and innate immune response. Predicted to be located in extracellular region. Predicted to be part of membrane attack complex. Is expressed in chondrocranium; cleithrum; and liver. Human ortholog(s) of this gene implicated in type I complement component 8 deficiency. Orthologous to human C8A (complement C8 alpha chain).

NR:

description
PREDICTED: complement component C8 alpha chain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU154384 True 4626 lncRNA 0.41 4 14049494 14055523

Neighbor

gene id symbol gene type direction distance location
si:ch211-188c16.1 NA coding downstream 354 14038702 ~ 14049140 (-)
LOC120568033 LOC103366454,LOC104932767,LOC101066162,LOC108238297 coding downstream 11193 14023028 ~ 14038301 (-)
LOC120568034 NA coding downstream 38252 14007742 ~ 14011242 (-)
pgap6 tmem8a coding downstream 43286 13996391 ~ 14006208 (-)
c11h7orf26 LOC103366860,LOC102212268,LOC102304778,LOC102798014,LOC100695326 coding downstream 64905 13978250 ~ 13984589 (-)
LOC120568588 c8b,LOC102794687,LOC102209383 coding upstream 977 14056500 ~ 14112121 (-)
LOC120567994 NA coding upstream 116623 14172146 ~ 14190109 (-)
dnm3b LOC104927414,LOC102288810,LOC102208633,LOC103366040,LOC101463593 coding upstream 136440 14191963 ~ 14215454 (-)
LOC120567997 LOC104927432,LOC101487132,LOC102794113,LOC102204900,LOC100692642,LOC102311096,LOC103365877 coding upstream 174913 14230436 ~ 14233700 (-)
fggy fggy coding upstream 183193 14238716 ~ 14254537 (-)
LOC120567953 NA non-coding downstream 101379 13942055 ~ 13948115 (-)
G114257 NA non-coding downstream 420827 13625776 ~ 13628667 (-)
G114256 LOC102077222,LOC102776852 non-coding downstream 424015 13622903 ~ 13625479 (-)
G114247 anxa13,LOC105930306,LOC100703370 non-coding downstream 484691 13556604 ~ 13564803 (-)
LOC120568710 NA non-coding downstream 500028 13533138 ~ 13549466 (-)
LOC120568036 NA non-coding upstream 69180 14124703 ~ 14171474 (-)
G114518 NA non-coding upstream 263820 14319343 ~ 14320763 (-)
G114530 NA non-coding upstream 363328 14418851 ~ 14466248 (-)
G114538 LOC104949927,LOC103364340 non-coding upstream 385358 14440881 ~ 14447933 (-)
G114544 NA non-coding upstream 461953 14517476 ~ 14517893 (-)
tfr1a NA other downstream 80683 13949871 ~ 13968811 (-)
dis3l2 dis3l2 other downstream 567269 13469531 ~ 13482225 (-)
G114152 NA other downstream 960931 13084561 ~ 13088563 (-)
LOC120568578 wdr48 other downstream 1074166 12966466 ~ 12975328 (-)
LOC120568934 LOC104956577 other downstream 1280869 12760748 ~ 12768625 (-)
LOC120568687 NA other upstream 558090 14613613 ~ 14618224 (-)
G114680 NA other upstream 740395 14795918 ~ 14797044 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other upstream 1234559 15290082 ~ 15304610 (-)
G115164 btf3l4 other upstream 2088637 16144160 ~ 16148121 (-)
cc2d1b cc2d1b other upstream 2127131 16182654 ~ 16201698 (-)

Expression


Co-expression Network