ro60 (trove2)


Basic Information

Item Value
gene id ro60
gene name trove2
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15013743 ~ 15026208 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU154767
AGATACCAGGTGGCAGCACAGACTGCACCCTTCCCATCACATGGGCCACAGAGAATGGGAAAGCTGTAGATGTGTTCATCATTCTGACCAACAACCCATTGTGGACGTTCACTGCCAGCCCAGTGGAGTCTCTGAAGAAGCACAGACAAAAATCCGGAGCCAATTCCAAATTGGTGATGTGTGGGCTGACTTCCATTGGACATGCCATTGCAGACACAGAAGACAGGCGTTTACTGAGCATTTGTGGCTTCGACCTTGGAGCTTTGACCGTCATTCGTGACCTGGCCCAGGATCTGATCTGATAAAGAATTGGGGTTGTCTCTAAATCGTGTTGTTGGAGCACAAAAAGGAAGGCACAAAGTGTACCAACTTGGCTCACTTAGCATGTAGAGTGCCCTAAAAATCCAAAAGATGTTGGCAATTACAATTCCTAATtctctttttatgttttgtcGCTTACAAGTTAATAGACAAATTGTCCAGCGGGCTGGACAACACTCAGCAAATTTTATgtgcatatattttttttcagaaatttgAAAAGGAATTGATAAGATATGATATGTCATTGCATATACTGTCAAGAGTGTAAGTGCAAACAGCACTCTGTATGTTAAGTGCTTTGATGGTTCTTGGTGAGACACTAACCCATTGAACAATAAATTCCACTCACTTATAGCTAGATGTTGGTAGATTAAATAAGAGGAACAGTGTAAGAGTCAGAATGTTTGAGGCTTAGTGCAACTGTAGGTTTATTTTAAGGCGATTCACTGTTGTTtctagtatgtatgtatgtatggtatGATTTGAGCAGGTTTGATATGATGGTAGaggcattttaaatttgaaagCCTGTCCCTCCGTATTATGTAGCATCATTATAAATAATTACCGGTATACTGTAAAA
>XM_039816193.1
ATGCATCCTGTGTCCTTGCAGTTGGTGTGCTACTGCCACCCAGTGCTTTCCGTTGGGAAAAAGCTGTGGGAGTTGATATCTGTGGTTAGAGGGGACCGGGatgctaacattaacGCTTTCTGTAGTGTTACAATGGAGCCTTTGGGAAGTACTCAGAGCAACCACACCCTGAACTCAACTGGTGATGGCTGTCCCTGGGAGGTCAGTGACAAGGCCAGACTGTGCCGCTTCCTCTGCTATGGCTCGGAGGGAGACTTGTACACTGCAAGAGAGGAGGGGCATGTCAGCATGGAGAACGCCGGAGCTCTGCTGTCACTGCTGCAGGAGAGCCGAGGTGCCGAGGTGGTGGAGGAGATAAAAAGGTTCACTCAGGATGGGAGAGCTGTCCGACTCGGCCCCTCGTTTTTTGCCTTGGCTTTGTGCTCCCAGCACTCGGAGCTAAAGACCAGACAGGCAGCATTTAAAGCCCTGAAGGAAGTTTGTCAGGACCCTGCCCACCTGTTTTCTTTCATAAATAACAAGAAGGAACTGAAAGAGCGGATGAAGTGTGGTATTTGGGGACGTGCCCTGAGGAGAGCAGTGTCTGACTGGTACAATGAGCAAGATGCCATGAGTCTGGCTGCGGCTGTGACCAAATGTaaacagagagagggatggtCACACCAGGACCTGCTTAGGCTCTCACACACTAAACCAGCTAATGAAGCAATTGCCTTGATCTGCAAATATGTAACAAAAGGATGGAAAGAAGTCCAGCTTGCTTACTCTGACAAAGAGAACTCAGAAGAGGTTGTCAAAGTGCTTTCGTATCTTGAAGTGGTGGAGAAGGTCAAGCACAGTTGTGATGAAACAGAGGTCATCAATTTAATAGAGGAACACAAACTGGAGAGGGAACAGCTGCTGACAGACCATCTGAAGTCCAAGCAGGTATGGAGAGCTTTGTTAAAGGAAATGCCTCTCCAATCAGTGCTTAAGATCTTGGGTAAGATGACATCAAAACAAATTCTTGAACCAGGAAGTTCAGAAACACAAGCCGTGTGTGACAGAATCCAGAGCGAGACGGCCCTGACGAAGGCAAAGATCCACCCTTTCAACATACTTTTGTTTTCTGAAAACTACAAAAGAGGCCAAGGCTATCAGGGTAAAACAAAATGGGAACCAGTCAGCAGCATCCTCAAAGCAATGGACTCTGCCTTTTATAAGAGTTTTATGAATGTGGAGCCTGTGGGTAAACGCTTTGTAGTGGCAGTAGACGTGAGCACATCACTAAGCAGCATTGTCCCAGGGACGTCAATCAGCACTGCTGTCGCCGCTGCAGCTATTACCATGATTTTTGCAAGGACAGAGGCAGACACACATGTGCTGGCCTACTCTGAAGGAGCTTTGGTTCCATGCTCTGTCTCTGCTGACATGAAtctcacacaaacaaCATACTGTATGTTCCAGATACCAGGTGGCAGCACAGACTGCACCCTTCCCATCACATGGGCCACAGAGAATGGGAAAGCTGTAGATGTGTTCATCATTCTGACCAACAACCCATTGTGGACGTTCACTGCCAGCCCAGTGGAGTCTCTGAAGAAGCACAGACAAAAATCCGGAGCCAATTCCAAATTGGTGATGTGTGGGCTGACTTCCATTGGACATGCCATTGCAGACACAGAAGACAGGCGTTTACTGAGCATTTGTGGCTTCGACCTTGGAGCTTTGACCGTCATTCGTGACCTGGCCCAGGATCTGATCTGATAAAGAATTGGGGTTGTCTCTAAATCGTGTTGTTGGAGCACAAAAAGGAAGGCACAAAGTGTACCAACTTGGCTCACTTAGCATGTAGAGTGCCCTAAAAATCCAAAAGATGTTGGCAATTACAATTCCTAATtctctttttatgttttgtcGCTTACAAGTTAATAGACAAATTGTCCAGCGGGCTGGACAACACTCAGCAAATTTTATgtgcatatattttttttcagaaatttgAAAAGGAATTGATAAGATATGATATGTCATTGCATATACTGTCAAGAGTGTAAGTGCAAACAGCACTCTGTATGTTAAGTGCTTTGATGGTTCTTGGTGAGACACTAACCCATTGAACAATAAATTCCACTCACTTATAGCTAGATGTTGGTAGATTAAATAAGAGGAACAGTGTAAGAGTCAGAATGTTTGAGGCTTAGTGCAACTGTAGGTTTATTTTAAGGCGATTCACTGTTGTTtctagtatgtatgtatgtatggtatGATTTGAGCAGGTTTGATATGATGGTAGaggcattttaaatttgaaagCCTGTCCCTCCGTATTATGTAGCATCATTATAAATAATTACCGGTATACTGTAAAAGAGAGGAGTTGAAAACTAAAGCACTACAAGTTGAAACCTATtctattgacttttttttttttttaagtaatatACATGTCTAGAATTCAATTTTCACAACTCTTGCCTTTAGTCTAGGTACAATTTGTAGTTATATTAACATTGGTTTTCCCTTAAGACAAATTTTCTTTCAAAACAGAATTTTCTGTACTGCTCTTGTCCAATTTATTCTTTAAAGCAATGGTTCTCAAATGTTTTACACTGCGTACCACTTCAGAAAATATTAGGCTCTCTAAGTACCACCATCATGGCCCACATTAAAATAGAGTAGCATACGCTTACCCTACAATATTTATTGTTGACAGCCACAACCACACTGTACTTCCTCTGTACCGCTTCAACTGAATCCAAATTTGAGGCGACTCGGGTCATATTTTCTTACTGTTTTGCATCTTTTGCTACTAGCAGGCACTGTGGAGACTTCACTGCCGCTGCTTAAGTAGCGGCAGTaagtaaaaatattacaattaaacaaacacttatttttttttatatttaagtatTATTATCAAGTCAACTGTGCCGGACCtacagagcaattgaaaatacGTTTCTCTCCGACCCACGGTGAAATAAAGACGTTTAtcgtgttttttgcccccaaggcactgttgggaggcactggttatggtcagggttaaggttagggttaggtgccttgaaggcagccggtcgcagcgctgcctggaaggagcagttgggggcaaaaaacaccatcgagcataGAAATACTACAACATTTCCAATAATAATTTGCACTAAAAAGAAGTAATATTTATAATTAATAAGCTAAGTAATATGTACAATAATACATTCTAAATAGTGCAaattccatccatcttcgtccgcttatccggtgtcgggtcgcggggggagcagctccagcaggggaccccaaacttccctttcccgagcaacattaaccagctccgactgggggatcccgaggcgttcccaggccagttCTAATTTGCATTCTAAATAGTGCAAATTATTATTGGAAATGTTATAGTATTTCTATggtattatgtttttaaatatattaataaaaatgtttttaaacgaTA

Function

symbol description
trove2 60 kDa SS-A/Ro ribonucleoprotein

NR:

description
60 kDa SS-A/Ro ribonucleoprotein

GO: NA

KEGG:

id description
K11089 TROVE2, SSA2; 60 kDa SS-A/Ro ribonucleoprotein

RNA

RNA id representative length rna type GC content exon number start site end site
TU154767 False 907 lncRNA 0.40 2 15022277 15025102
XM_039816193.1 True 3457 mRNA 0.43 10 15013743 15026208

Neighbor

gene id symbol gene type direction distance location
LOC120567612 LOC104945192,LOC104921265 coding upstream 10711 15001264 ~ 15003032 (+)
LOC120568793 rgs21,LOC103361784,LOC103139988,LOC107082594,LOC101157323,LOC107373725 coding upstream 17581 14994823 ~ 14996162 (+)
mier1b mier1 coding upstream 221105 14781744 ~ 14792638 (+)
dynlt5 tctex1d1,LOC100691399 coding upstream 233876 14777956 ~ 14779867 (+)
sgip1b sgip1,LOC104955871,LOC102197882 coding upstream 239440 14752942 ~ 14774303 (+)
cdc73 cdc73 coding downstream 1627 15027835 ~ 15061967 (+)
LOC120568423 NA coding downstream 44275 15070483 ~ 15088029 (+)
LOC120568425 NA coding downstream 63211 15089419 ~ 15093399 (+)
LOC120568427 NA coding downstream 71369 15097577 ~ 15111430 (+)
LOC120568088 NA coding downstream 102614 15128822 ~ 15138022 (+)
G114650 NA non-coding upstream 201534 14811662 ~ 14812209 (+)
G114585 NA non-coding upstream 319841 14693566 ~ 14693902 (+)
G114561 NA non-coding upstream 386973 14626167 ~ 14626770 (+)
G114550 NA non-coding upstream 453066 14558365 ~ 14560677 (+)
G114488 NA non-coding upstream 672402 14337822 ~ 14341341 (+)
G114745 NA non-coding downstream 38882 15065090 ~ 15065393 (+)
G114746 NA non-coding downstream 39915 15066123 ~ 15066439 (+)
G114747 LOC105904583 non-coding downstream 41941 15068149 ~ 15068451 (+)
G114793 NA non-coding downstream 135067 15161275 ~ 15251219 (+)
G114889 setd9,LOC102796737 non-coding downstream 390524 15416732 ~ 15418048 (+)
rgs18 rgs18,LOC106918816,LOC103139989,LOC103479038 other upstream 20660 14985777 ~ 14993083 (+)
LOC120568245 LOC103365337,LOC101481118,LOC102206401,LOC102290843 other upstream 717750 14287150 ~ 14295993 (+)
si:ch73-71c20.5 NA other upstream 1827379 13183284 ~ 13186364 (+)
ndufb3 ndufb3 other upstream 1888280 13123030 ~ 13125463 (+)
rpl37a rpl37a,RPL37A other upstream 1896387 13114596 ~ 13117356 (+)
G114789 NA other downstream 125588 15151796 ~ 15157199 (+)
LOC120568540 LOC108238308,LOC100706341,LOC103359463,LOC106530177,LOC102798013,LOC101474556,LOC102303803 other downstream 312349 15338557 ~ 15368780 (+)
asip2b agrp2,LOC105941385,LOC102299529,LOC102795060,LOC103358555 other downstream 446494 15472702 ~ 15478462 (+)
zgc:153115 klf13,LOC104948390,LOC103358333,LOC101073550,LOC105030379,LOC106568757,LOC107752329 other downstream 494574 15520782 ~ 15528769 (+)
slc35a3b LOC103357859,LOC104957008,LOC101481522,LOC102792347 other downstream 528263 15554471 ~ 15568494 (+)

Expression


Co-expression Network