G114909 (ripk2)


Basic Information

Item Value
gene id G114909
gene name ripk2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15444478 ~ 15455375 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU155002
GTTCAATGTATATTTATTACTGAATTTGGTCAATCAGCACTTAAACATATGAAAACGTTGACAGAAAACTATagaaatcatttattttaatccAACTGATTTAAAACAGATTATACTGAACTGGAAAATCTTCTCTTTAAAGATTATCTGGCTGTTTTTTGACAAATGTGATGCACAAAGTCACATACATACCATGCTACATCTTATAAATGGTACCATACATATTGGTCCATTATCATTTGTAACGTATCCTCATACAGTGGTTTGTATGATATCTTATAAAAAGTTATGCACAATTTCTGAGCGTTATGCCACAAATGTCAAGCAACACGAGCGATCGGaattttaaaaagtaagaaTTATAAAATAAGTTTGTTACATAACTTACGTACGGGGTATCGTTGGGCAAAAATTCCATAATCATTTTCAGCATATTGcaattcaagtggtctgagagaaaactactTCTCCATCTCCTCTTGGCTCACTTTTCAGGCTTTAAAAAATCTAGCCCGTGACGGGAGACTttagccaatcacaggtcatttaaagcaacactagaacttttcctgcttcagaccccctacaggttggaagcggaattgtccattacattacattatgcaagtttgccagatcaggtGAGTAAGTTGGAGtacaaacgtttagctccgcccacatttagcccaaccccggtttgcgtactgcagtcaggtgcaattggaGTAAGTAGCGGCTCTGTAGtgcgaatgaactggacaatgtaatgtaatggagaattccgcttccaacctgtagggggactgaaatgggaaaagttctctagtgttgctttaagagaGAGTGTTCCAATTGGCTGTTTTGCGCATGCATTTCCTGTGGGACAGagcagggagagggagagctgcaggaaaaAGTCTTATTATGAAGTTGTATTCTTAAAACCTAATATTGAAATCAACCGTTTTAATTGAAAGAATTATGACCCGTAAACAGGGCACTTAACTTAAACTGCTCCACAGTGAAGAAAGCAAGTTACATCTTCtagtctaaaaaataaaatgttaaaggaGCTCCATATTTCCTCCATAGTTTTTTGAAATCCTCATAAAAGATATTCCTTGATCTCTGTAGAAAGGGGCATCCCATTTGTAGAAGAAAGCAACAGTTTCTCAAGTGCCTGCTCCTTCATGTGTCAAATTCAGTCAGGCAGCAGTAGAGCAGCATCTGGCTGTATTTGGTGACAAAGGctggaggaggaaaagagGGAAAGACAGAAACCACAGTGACCATCTTGACGACAAAAAGAACAGGTAGGAGTTGTAGTGTAAAGTTGGCACAGTTAATAATCTGGATTGTTTTCATGGATTGGCTGTGACTGCTGCTACTTGTTCCTGGGGATATTGCAGGACATGGACAGCGGCGGCGCATTGGGGACGAGAGTAGGGGAGCCGATTTCAGATGGGAACGGCTGCAGGCCCATTTGCTTGTTGTCACACAGCTTGCGGACAACAATGCGGCAGAAGTCTTCGTTGTGTCGGTGACAGTTGTCCAGGAGCTGGCGGACCTTAGCGGTGCGCGTCGGCTGGGTCTTCACCAGCTCGTAATCCTCCCGCATAAGCATGGTTTGGGCCAGCAGGGCATCCAAGCTTTGGTTCAGACAAGCCTCTGTCATCTGGGAGACAATATCCTCACGCCGTGTTGCGATCCACTGGGCAATTGGGCCTTGTGAGGGAGGGGAATGCCGCAACAGAGGAG

Function

symbol description
ripk2 Predicted to enable CARD domain binding activity and JUN kinase kinase kinase activity. Acts upstream of or within antibacterial innate immune response; defense response to virus; and regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Is expressed in brain; gill; liver; pleuroperitoneal region; and unfertilized egg. Orthologous to human RIPK2 (receptor interacting serine/threonine kinase 2).

NR:

description
PREDICTED: receptor-interacting serine/threonine-protein kinase 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155002 True 1758 lncRNA 0.43 3 15444478 15455375

Neighbor

gene id symbol gene type direction distance location
ccdc39 LOC104962657 coding upstream 12704 15421740 ~ 15431774 (+)
dcun1d1 dcun1d1,LOC104947222,LOC107568628,LOC103396145 coding upstream 23320 15418264 ~ 15421158 (+)
b3gnt5b b3gnt5,LOC103359375 coding upstream 62148 15375813 ~ 15382330 (+)
LOC120568590 NA coding upstream 133938 15303426 ~ 15310540 (+)
ephb3a LOC103359932,LOC100706883,LOC101473098 coding upstream 178254 15232882 ~ 15266224 (+)
LOC120568251 atp6v0d1,LOC102795347,LOC102213421 coding downstream 24653 15480028 ~ 15483769 (+)
tsen15 tsen15,LOC102794209 coding downstream 79282 15534657 ~ 15536850 (+)
sec22ba LOC103358005,LOC104948387 coding downstream 91414 15546789 ~ 15548920 (+)
cmpk cmpk1 coding downstream 117876 15573251 ~ 15579524 (+)
zgc:153913 LOC104957208 coding downstream 166679 15622054 ~ 15624462 (+)
G114905 NA non-coding upstream 6725 15436104 ~ 15437753 (+)
G114904 NA non-coding upstream 11534 15432671 ~ 15432944 (+)
G114889 setd9,LOC102796737 non-coding upstream 26430 15416732 ~ 15418048 (+)
G114793 NA non-coding upstream 193259 15161275 ~ 15251219 (+)
G114747 LOC105904583 non-coding upstream 376027 15068149 ~ 15068451 (+)
G114944 NA non-coding downstream 93754 15549129 ~ 15549920 (+)
G114991 NA non-coding downstream 169727 15625102 ~ 15625323 (+)
G114998 NA non-coding downstream 221718 15677093 ~ 15677343 (+)
LOC120568726 NA non-coding downstream 290802 15746177 ~ 15759108 (+)
G115055 NA non-coding downstream 387779 15843154 ~ 15848292 (+)
LOC120568540 LOC108238308,LOC100706341,LOC103359463,LOC106530177,LOC102798013,LOC101474556,LOC102303803 other upstream 75698 15338557 ~ 15368780 (+)
G114789 NA other upstream 287279 15151796 ~ 15157199 (+)
ro60 trove2 other upstream 418270 15013743 ~ 15026208 (+)
rgs18 rgs18,LOC106918816,LOC103139989,LOC103479038 other upstream 451395 14985777 ~ 14993083 (+)
LOC120568245 LOC103365337,LOC101481118,LOC102206401,LOC102290843 other upstream 1148485 14287150 ~ 14295993 (+)
asip2b agrp2,LOC105941385,LOC102299529,LOC102795060,LOC103358555 other downstream 17327 15472702 ~ 15478462 (+)
zgc:153115 klf13,LOC104948390,LOC103358333,LOC101073550,LOC105030379,LOC106568757,LOC107752329 other downstream 65407 15520782 ~ 15528769 (+)
slc35a3b LOC103357859,LOC104957008,LOC101481522,LOC102792347 other downstream 99096 15554471 ~ 15568494 (+)
st6galnac3 st6galnac3 other downstream 309308 15764683 ~ 15843094 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other downstream 410211 15865586 ~ 15921531 (+)

Expression


Co-expression Network