st6galnac3 (st6galnac3)


Basic Information

Item Value
gene id st6galnac3
gene name st6galnac3
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15764683 ~ 15843094 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU155129
CCGCTGCCCAGAGGGGAGGACTGGAAGGATTCAAAGTCTTCTAATTTAGGCGACTTGATGCACAGGGTCCCTGACGACTGTAATATACTGCAGCAGAGCTTCACAATCTCACTCCTACTGCACTGTTTACTAGCACACATAGGCACTCCATTTTGGACTCTTTCTCAGTAAGCATTGGTTTGGTGATTTACAGGTCAAAAGACATGTAGGTTTAAACTTGCGGGTTTTTGGAAATTATTGTATGTAACCGAGACATCTATAAAAACTACCCCCCTTTCCACTGCTCAAACGTTTTCAGGACCCCAGGAACATTTTTAAGAAATCTTCCTGCAGGAAACAGGGTCTAAATTCAGTTCCTTGCCCCCAAAAAGTTCCCACTCTGTGTGTAGCACAC
>TU155130
TGGGGGTGAAAAAACCCGAGAGAGGAGACGAATAACGGTACACTCCAATATTTATGGAGCCGATCCCCGCATTTAACCGCACCACATCGGCGTCTCCTCCTGTGATGCATGCATGAATAAATGTGTTTGGAAACGGACGCGGTGAACGGCGTGTTGGGGCTGACGAAAACAAGCGGTCCACCATTGTCTGCGTAGAAATAAGAATGGCCTGGATGTGTAAGagGAAGTCGTTGATCGCCACCAGTCTGATCGTGGCGGTGTCGCTCTTTGTGGTCGTGGTATACTACGCGGAGAAGCCCTACTTCCTGCTGCAGCCAGTGTTCGGTCAGACGATCAGTAGCCACCAGATGTTCTCCAAACAGCCTTATAAGGCCTTCAAGCCTCACCCAGGCTATGTTAGCATTTCCAAACAGGAGCATCTGAAGCTGCACTGTGAGCTCTGCAGCATCGTGTCCAGCTCTGGCCAGATGTTGGGTCAGGCTGCTGGCCCGCAAATCGACCGCTCTCACTGCATCTGGCGGATGAACAACGCGCCCACAAAGGGCTTCGAACGTGACGTGGGCCAGCGGACGACGCTGAGAGTTGTCTCGCACACCAGCGTCCCCCTACTGCTGCAGAACGCCAAGTACTTCTTTGGCCAGGGTAATGACACTGTGTACGTTGTGTGGGGGCCTCTACGAAACATGAGGAAGGATGGGAATGGCATTGTGTACAACATGCTGCAAAAGGCGGCTGAGAACTACCCTCATGCACGCATCTATGTCACCACAGAGGACAGGATGAAATACTGCGACATGGTCTTCAAGAATGAGACGGGTAAAGATAGAGGCCTTATCAAAGTCAGTTACTTAGCTTTCCCTCTGAAGAGGTTCAACACGGCACTGGAGGCC
>XM_039816409.1
TCCAGGCAAGCTTCATGGGGGTGAAAAAACCCGAGAGAGGAGACGAATAACGGTACACTCCAATATTTATGGAGCCGATCCCCGCATTTAACCGCACCACATCGGCGTCTCCTCCTGTGATGCATGCATGAATAAATGTGTTTGGAAACGGACGCGGTGAACGGCGTGTTGGGGCTGACGAAAACAAGCGGTCCACCATTGTCTGCGTAGAAATAAGAATGGCCTGGATGTGTAAGagGAAGTCGTTGATCGCCACCAGTCTGATCGTGGCGGTGTCGCTCTTTGTGGTCGTGGTATACTACGCGGAGAAGCCCTACTTCCTGCTGCAGCCAGTGTTCGGTCAGACGATCAGTAGCCACCAGATGTTCTCCAAACAGCCTTATAAGGCCTTCAAGCCTCACCCAGGCTATGTTAGCATTTCCAAACAGGAGCATCTGAAGCTGCACTGTGAGCTCTGCAGCATCGTGTCCAGCTCTGGCCAGATGTTGGGTCAGGCTGCTGGCCCGCAAATCGACCGCTCTCACTGCATCTGGCGGATGAACAACGCGCCCACAAAGGGCTTCGAACGTGACGTGGGCCAGCGGACGACGCTGAGAGTTGTCTCGCACACCAGCGTCCCCCTACTGCTGCAGAACGCCAAGTACTTCTTTGGCCAGGGTAATGACACTGTGTACGTTGTGTGGGGGCCTCTACGAAACATGAGGAAGGATGGGAATGGCATTGTGTACAACATGCTGCAAAAGGCGGCTGAGAACTACCCTCATGCACGCATCTATGTCACCACAGAGGACAGGATGAAATACTGCGACATGGTCTTCAAGAATGAGACGGGTAAAGATAGGATCCAGTCCGGCTCCTACCTCAGCACCGGCTGGTTCACGCTCATCCTCGCCATGGACATGTGCAAAGAGATCCATATCTACGGGATGATAAATGACACCTATTGCAAGACGGAGGGTTACAGAAAGGTTCCCTATCACTACTACGAGGCGGGCACCCGGGACGAGTGTGCAGAGTATCTGCTCCATGAGAGCGCCCCCTACGGTGGGCACCGCTTCATCACCGAAAAGTCTGTGTTCACCAAGTGGGCCAAAACACATGCCATCAAGTTCTTCAACCCACTTTGGCAGCTGTCGTGACCCTGGCTGAACCGACATGGAAATACTACACCATCATCGTCATTATCATCATTGTCGTCATCTGGGGACCAGCTGGGCCTCTACACTGACCGAAAGTGTGTTCCCTGATGTGCACAAACATCATTCTTGGCACAAATTCCACTTCATatccattttaaaaatgttggttGATGGCTGCTTGTCAAGTCCTGGATGGCTAATATCCAGGAAGtgctggttgttgtttttttgaaggCCACTCAATCAGACAGACTGCCGGTCAATCCTGGACAGCAAAAACATATCTCTTGCTTCTTAAGTCTTTTTCCTCTGAATTTGAAAGCTGAAGAAAGTGCACAGCACGCCGCTCTTTATTGACTAATCGATCCATTCGCTGCTCTGTGAGTTTAGCAAAGGATGGCTCGTagactaatttaaaaaaaaaaagaaaaaaagattagaAAACAACAGGAAGAAGTGACAACCATCTGTTCACTTTCTGTGACCTCAGCAGCTCACATGTCTGCAGGCCTGCTGCGTTAAAGTGTTTTTCAGGACTGTAGAGCTCAGCTGCTGTCAAGACGGGTCACGTTGCCATGGATGCTTGACGAGCTCGCCTACTCTGTTTCCTCTGCGCGTCTGTCTTCTTCTGTCAGGCTGTAATTAATCTATAACAAGTATCATTCAGGCCTTTGTCTCTCACTGAGGGATCATTGAAGGCAATTTTCAATTTACTCTGCAGCATCTAAAAAAGCTTCAACAAACGGATTTCAGTCAAACTCCAAGGTGAACCACAGTTGTACAtgtaaatcagttttttttatatcattatACTTGGTTGTTAAGCTGTGTGTAAACTCAGACAGCTTAAAGATgtcagctttttatttttattttataatgctGTGAAATCTTTTGGCTTGATGTTGGTAGAGGTTGCTAATTTATTCTGCAGAGACAAGTTGCTAACACTCTTTAACAGTGTGCTATTGACAATGTGGGCATCACAGCACATAGAGCAATGTGCAATAAGAAACTCCATACTTGCGGAAGGAGTTAAATCATCTGTGGCCCCGCAGAGGGAGAGATTTATGTGTGCAGTGAAACCATTTGAAGTTAATTGTATTCTATTATCATTTTGTGCCTGCAATATACTCTGCAGTTCATTGTatagagacagaggaagaggctctctctctcgctcgctcATATTCTCATCCAGCTTTGTGCCTCTTTGTGTACAGTAtcactgtgtgaacacataTTCCCATTTGTCTTTGAACGCAGTGTGCATGTCTCCTGGTTCAGGTCATTACATTTGAATGCATCTGATTCAGGACAGTGAAGAATAATCAGTGGCGTGCTGAGGTGTGTAGGTTGGCCGGTAGCTGTGGAGAGCTGAGACACTGACTGTGACCGTGACTCCAAACCCCCaccgccccccacccccccacccccttgaGGCTGTGATTAGTGTCCCGGTCAGAGCCGCTGCCCAGAGGGGAGGACTGGAAGGATTCAAAGTCTTCTAATTTAGGCGACTTGATGCACAGGGTCCCTGACGACTGTAATATACTGCAGCAGAGCTTCACAATCTCACTCCTACTGCACTGTTTACTAGCACACATAGGCACTCCATTTTGGACTCTTTCTCAGTAAGCATTGGTTTGGTGATTTACAGGTCAAAAGACATGTAGGTTTAAACTTGCGGGTTTTTGGAAATTATTGTATGTAACCGAGACATCTATAAAAACTACCCCCCTTTCCACTGCTCAAACGTTTTCAGGACCCCAGGAACATTTTTAAGAAATCTTCCTGCAGGAAACAGGGTCTAAATTCAGTTCCTTGCCCCCAAAAAGTTCCCACTCTGTGTGT

Function

symbol description
st6galnac3 Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in brain; heart; and intestine. Orthologous to human ST6GALNAC3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3).

NR:

description
PREDICTED: proteoglycan 4-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K03373 SIAT7C, ST6GalNAc III; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7C)

RNA

RNA id representative length rna type GC content exon number start site end site
TU155129 False 394 lncRNA 0.44 1 15842701 15843094
TU155130 False 890 TUCP 0.53 4 15764698 15800493
XM_039816409.1 True 2993 mRNA 0.47 5 15764683 15843087

Neighbor

gene id symbol gene type direction distance location
rabggtb rabggtb coding upstream 19455 15737192 ~ 15745228 (+)
acadm acadm coding upstream 31168 15725767 ~ 15733515 (+)
LOC120567732 rps8,LOC104932872 coding upstream 40295 15720938 ~ 15724388 (+)
LOC120569145 NA coding upstream 40886 15723729 ~ 15723797 (+)
LOC120569144 NA coding upstream 41480 15723135 ~ 15723203 (+)
ak5 ak5,LOC102787869 coding downstream 113265 15956359 ~ 16031840 (+)
miga1 miga1 coding downstream 235393 16078487 ~ 16093938 (+)
dnajb4 dnajb4,LOC102785119 coding downstream 270146 16113240 ~ 16118518 (+)
gipc2 gipc2 coding downstream 276474 16119568 ~ 16136858 (+)
LOC120569020 btf3l4,LOC100695932 coding downstream 301013 16144107 ~ 16148770 (+)
LOC120568726 NA non-coding upstream 5575 15746177 ~ 15759108 (+)
G114998 NA non-coding upstream 87340 15677093 ~ 15677343 (+)
G114991 NA non-coding upstream 139360 15625102 ~ 15625323 (+)
G114944 NA non-coding upstream 214763 15549129 ~ 15549920 (+)
G114909 ripk2 non-coding upstream 309308 15444478 ~ 15455375 (+)
G115055 NA non-coding downstream 60 15843154 ~ 15848292 (+)
G115095 NA non-coding downstream 250916 16094010 ~ 16097398 (+)
LOC120568625 NA non-coding downstream 260624 16103718 ~ 16107792 (+)
G115103 NA non-coding downstream 293071 16136165 ~ 16138828 (+)
LOC120568989 NA non-coding downstream 366816 16209910 ~ 16216365 (+)
slc35a3b LOC103357859,LOC104957008,LOC101481522,LOC102792347 other upstream 196189 15554471 ~ 15568494 (+)
zgc:153115 klf13,LOC104948390,LOC103358333,LOC101073550,LOC105030379,LOC106568757,LOC107752329 other upstream 235914 15520782 ~ 15528769 (+)
asip2b agrp2,LOC105941385,LOC102299529,LOC102795060,LOC103358555 other upstream 286221 15472702 ~ 15478462 (+)
LOC120568540 LOC108238308,LOC100706341,LOC103359463,LOC106530177,LOC102798013,LOC101474556,LOC102303803 other upstream 395903 15338557 ~ 15368780 (+)
G114789 NA other upstream 607484 15151796 ~ 15157199 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other downstream 22492 15865586 ~ 15921531 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other downstream 383213 16226307 ~ 16228551 (+)
LOC120568419 LOC102779359 other downstream 595931 16439025 ~ 16527682 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other downstream 767282 16610376 ~ 16612206 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other downstream 1563403 17406497 ~ 17483553 (+)

Expression


Co-expression Network