G115060 (st6galnac5,LOC102788813)


Basic Information

Item Value
gene id G115060
gene name st6galnac5,LOC102788813
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15918321 ~ 15921531 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU155189
acacacacacacacacacacacacacacacacacacacctgtctgagAATAACTAATTATAGCCTAATTAATGTTAATGCATAAAAGACAAATGTGGGATTACTATTCTTATATCATGAGCTATTTGGGATTTTTGGGGTAATGCatatatgataataataaaataaaaaaatcgaaGGGTTAGAATACTGATTTGGACGTTGATTACCATGGATCAGCCCTAGAATTTAAGGTTGGAGCTTATTATTACACAGTCTATGGGCTGGAGttagcagctggttagcttagtttagcatacaGGATGagaggaaacagaaacacagcTAGCCCTTGCCTGTCAATAGGTAGctaaatccacctaccagcaccttttCAAGCCCACCAGTTAATACATTATATCTTATTAGTTTTTGTAGAAATACAACTTATGCTTTTTAGTGTAATGCTGTAATTTTAGTTATGGGGCTTATGTGACAGAACAAGTCTTGGCTGGGACCAGGAGCTTCCTGGAATCAAGAAACAGTCCAGCAGAGCCCACATAACTCCCAGTAAAACAGCAAATTACATTCCGGTTTTCACAGCTAACAACTAGCTAGCCAGACAGAAAGGGTATAATCATATTTCTAATAAAGTCAAGCTATTCCTTTAAGTTATTCATGAAGCGGACAATTCACATATTCCACTGGTTTCGgcttgtccaaaaaaaaaaaaaaaagattgctgCTTTTCTGTTCTATATAATACCAATTGAATAgctttaggttttggactgttatGTATAAAACAAGCAATCTAaaaatgtcatcttgggctCGGGGAACTTGTGATGTacatatttctatttttatagaccaaacaatataaaatgaaaatagttgCAGCCCCAAACGACATACTGTGACTAAttagattaattgattaattaggCAAAAAATATTCAAGTGAAAACAAAGGCATTAGTCTTTGCTACAGCACAAAGTCGGCAGCAGGACTCTCAGTACAGCAGCAGCACCCCTGCAGCTGTTTGTGATGTATGAAAAGTAATCATGTCCTTGTCGCTACCGAGGAAACGTGTTGTGAAACACGTCCTTGTGTGAGCACCTATGTATCTGACCAACATCATCCCTCCTCTCATTACTCACATTACAGAGATGAGGGTAAAATCAATAGGGACTTAGCACCAGGATGTATCATTAAGATAACCACATGTCTCATCACTTTCTCCAGACCAACACCTCATTCTTATTCATagaggagggaagaggggaAAATAGAGGATCTCAAAGAGAGGAAGGGGCAGTCTACAAGCAGCATATACTTCATCAAATGAGAGCAGAGTGTACATAAAACAAAATCCAGACCGAGAGAGGAAAAGACTGACAGATCACATACTCATCAGTTTAACAGAAAAACTGTGTAATTCTTCTGCGAGGCGATTCGGGCAgcagatatatactgtatagtagGATGGATGGCGCTGCTGCATCCCTGCTTTCGATTTTAATCTCCCACTTGTCTTGTGTGACATGGCTGTGCATTTACATGGAAATCCGGCTTGTAGCTATATAAATCGCGCTATTAAGTGGTGACAGGAGCCGACAAAGCCTTTTGATACATACGTACGGGCTGAGGCGGTACACACGCATTAGATGAAACCTCTCAGTTAATGTTACACACTTGTCACTCAGCCAGGAAGTACTGCATTGCAAAATTTGACTTGGGTGAGCTTACAATGCACATATCTGAAAGACAGTAAAAATGAAAGTCAGGGAAGTGATTCATATCTGCTTTTGTTGCTCGAGACAGGGGTGAAGCTCATCCAACTTGACCTCCTCAGTCTTTGAAAAACGCAGACGAATATGAATCTGAACAGTGACGATTCACACTTCAAATAGCCAATACATTGTTAGATTACGGGCATTGTAATGGTATTTTTCTTTCAGTAAACTAAGTGGTGAATCCTGCATAGATCCTTCATCCAGCAGAGGCTTTGTGGAGAGCCCAAACTCAATGTTTGTATCCTCTGTGATCCctcaggtaaacacacacacacacacacacacacacacacacacacacacaatccacagTAAGACACAGCATGCATGCATTGCGAGTGGAGTGTGTAATGATGTGATGCCTCCTTGTATAAACTCACTTTACAAGTTGTACAAGGGATGTACAAAGTTTGATCTGGTTCACCTCAGTAAACAGAACACACTGCTGGAGAAGCAGTGGTGAAGCTGGAGAAATGTTCATAACAAATGTCAACAAGACTCACAGTTTATCCGTGGTAACTATTTTTCTTGCCTACTACACATTTTATTCTTCTGTTAGGGGTCCAGCAGTCCTTAGTGCAAATGTCCCCCATCCTCACTCTTTCTTAGATGAATCTCTAAAGCATTTTCTTCACCCCAACACAGGTCACGTCTTCTGGGGTACCAGGGGCGCCGCTGTGACCGTCCCCTCCAGCGTGTGGTTGGCTGGGAGAGGTGGAGGGCTCCAGTCCGGCTGGTAGAAGTGGATGTCAAAAGTCCGTGCCCATTTAGCGAAGACCCGCTTCTCTGTGATGAAGCGGTGGTGGCTTCCCCGCCGCCCACGCTCATGAGAAATGTACATGGCACACTCATCTGGACCACGTGGCTCGTAGTAGTGGTAAGGGACT
>TU155190
GACtgataaaagtattttattAAGTGGAATGATACATTTCCATCCtgggcaacaacaaaaaaatagagGCAGGTGAGCGAGGATTTCTTCTGTTGATTTCTTCCCATGGAGCCGGCATGAAAACTAGTTTAGTTAACTTCTGTTTTCTGGCAGGCAGGTTAGCCTGCCAATTTGCACTCTGCAGCTGCTAACAAACGACAGAGACGTTTACGAAAAACGGTTAGTATGGATTGGATAATCACATCAAATAAATTatacatataaaatatatacatggcCTGTATACATGGCATACAGACAATCATACTTTATCGAGGCTAAGCTGTTACAGTTTTCAGGTGTTTCCTTTGGCATATCTGGCTCTCGAAAAAGGGGGGCATTTTCGAAAAATTTGAGATTATTCCAGACgcttgactttttcgacatctTGCATGCTGATAGTTACAGccgagtctctctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacctgtctgagAATAACTAATTATAGCCTAATTAATGTTAATGCATAAAAGACAAATGTGGGATTACTATTCTTATATCATGAGCTATTTGGGATTTTTGGGGTAATGCatatatgataataataaaataaaaaaatcgaaGGGTTAGAATACTGATTTGGACGTTGATTACCATGGATCAGCCCTAGAATTTAAGGTTGGAGCTTATTATTACACAGTCTATGGGCTGGAGttagcagctggttagcttagtttagcatacaGGATGagaggaaacagaaacacagcTAGCCCTTGCCTGTCAATAGGTAGctaaatccacctaccagcaccttttCAAGCCCACCAGTTAATACATTATATCTTATTAGTTTTTGTAGAAATACAACTTATGCTTTTTAGTGTAATGCTGTAATTTTAGTTATGGGGCTTATGTGACAGAACAAGTCTTGGCTGGGACCAGGAGCTTCCTGGAATCAAGAAACAGTCCAGCAGAGCCCACATAACTCCCAGTAAAACAGCAAATTACATTCCGGTTTTCACAGCTAACAACTAGCTAGCCAGACAGAAAGGGTATAATCATATTTCTAATAAAGTCAAGCTATTCCTTTAAGTTATTCATGAAGCGGACAATTCACATATTCCACTGGTTTCGgcttgtccaaaaaaaaaaaaaaaagattgctgCTTTTCTGTTCTATATAATACCAATTGAATAgctttaggttttggactgttatGTATAAAACAAGCAATCTAaaaatgtcatcttgggctCGGGGAACTTGTGATGTacatatttctatttttatagaccaaacaatataaaatgaaaatagttgCAGCCCCAAACGACATACTGTGACTAAttagattaattgattaattaggCAAAAAATATTCAAGTGAAAACAAAGGCATTAGTCTTTGCTACAGCACAAAGTCGGCAGCAGGACTCTCAGTACAGCAGCAGCACCCCTGCAGCTGTTTGTGATGTATGAAAAGTAATCATGTCCTTGTCGCTACCGAGGAAACGTGTTGTGAAACACGTCCTTGTGTGAGCACCTATGTATCTGACCAACATCATCCCTCCTCTCATTACTCACATTACAGAGATGAGGGTAAAATCAATAGGGACTTAGCACCAGGATGTATCATTAAGATAACCACATGTCTCATCACTTTCTCCAGACCAACACCTCATTCTTATTCATagaggagggaagaggggaAAATAGAGGATCTCAAAGAGAGGAAGGGGCAGTCTACAAGCAGCATATACTTCATCAAATGAGAGCAGAGTGTACATAAAACAAAATCCAGACCGAGAGAGGAAAAGACTGACAGATCACATACTCATCAGTTTAACAGAAAAACTGTGTAATTCTTCTGCGAGGCGATTCGGGCAgcagatatatactgtatagtagGATGGATGGCGCTGCTGCATCCCTGCTTTCGATTTTAATCTCCCACTTGTCTTGTGTGACATGGCTGTGCATTTACATGGAAATCCGGCTTGTAGCTATATAAATCGCGCTATTAAGTGGTGACAGGAGCCGACAAAGCCTTTTGATACATACGTACGGGCTGAGGCGGTACACACGCATTAGATGAAACCTCTCAGTTAATGTTACACACTTGTCACTCAGCCAGGAAGTACTGCATTGCAAAATTTGACTTGGGTGAGCTTACAATGCACATATCTGAAAGACAGTAAAAATGAAAGTCAGGGAAGTGATTCATATCTGCTTTTGTTGCTCGAGACAGGGGTGAAGCTCATCCAACTTGACCTCCTCAGTCTTTGAAAAACGCAGACGAATATGAATCTGAACAGTGACGATTCACACTTCAAATAGCCAATACATTGTTAGATTACGGGCATTGTAATGGTATTTTTCTTTCAGTAAACTAAGTGGTGAATCCTGCATAGATCCTTCATCCAGCAGAGGCTTTGTGGAGAGCCCAAACTCAATGTTTGTATCCTCTGTGATCCctcaggtaaacacacacacacacacacacacacacacacacacacacacaatccacagTAAGACACAGCATGCATGCATTGCGAGTGGAGTGTGTAATGATGTGATGCCTCCTTGTATAAACTCACTTTACAAGTTGTACAAGGGATGTACAAAGTTTGATCTGGTTCACCTCAGTAAACAGAACACACTGCTGGAGAAGCAGTGGTGAAGCTGGAGAAATGTTCATAACAAATGTCAACAAGACTCACAGTTTATCCGTGGTAACTATTTTTCTTGCCTACTACACATTTTATTCTTCTGTTAGGGGTCCAGCAGTCCTTAGTGCAAATGTCCCCCATCCTCACTCTTTCTTAGATGAATCTCTAAAGCATTTTCTTCACCCCAACACAGGTCACGTCTTCTGGGGTACCAGGGGCGCCGCTGTGACCGTCCCCTCCAGCGTGTGGTTGGCTGGGAGAGGTGGAGGGCTCCAGTCCGGCTGGTAGAAGTGGATGTCAAAAGTCCGTGCCCATTTAGCGAAGACCCGCTTCTCTGTGATGAAGCGGTGGTGGCTTCCCCGCCGCCCACGCTCATGAGAAATGTACATGGCACACTCATCTGGACCACGTGGCTCGTAGTAGTGGTAAGGGACT

Function

symbol description
st6galnac5 Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide biosynthetic process. Predicted to be located in Golgi membrane.

NR:

description
PREDICTED: alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155189 False 2665 lncRNA 0.42 1 15918321 15920985
TU155190 True 3211 lncRNA 0.42 1 15918321 15921531

Neighbor

gene id symbol gene type direction distance location
cldn1 cldn1 coding downstream 297662 15616397 ~ 15620659 (-)
bcl6ab NA coding downstream 330437 15580776 ~ 15587884 (-)
fam78ba LOC108248539,LOC106530399,LOC103357776,LOC101481240,LOC104920913,LOC105925252,LOC103479089 coding downstream 345181 15568830 ~ 15573140 (-)
imp3 imp3 coding downstream 364352 15549860 ~ 15553969 (-)
zgc:55943 clg18h1orf21,LOC104920916,LOC103358173,LOC102298056 coding downstream 370964 15537896 ~ 15547357 (-)
pigk pigk coding upstream 2171 15923702 ~ 15954239 (-)
zzz3 zzz3 coding upstream 111751 16033282 ~ 16054068 (-)
usp33 usp33 coding upstream 132728 16054259 ~ 16077214 (-)
fubp1 fubp1 coding upstream 172477 16094008 ~ 16103715 (-)
slc25a24l LOC105932242,LOC107095427,LOC104957513,LOC102785394,LOC101478509 coding upstream 183241 16104772 ~ 16111436 (-)
G115056 NA non-coding downstream 71712 15843159 ~ 15846609 (-)
G115054 NA non-coding downstream 75228 15842750 ~ 15843093 (-)
G115048 NA non-coding downstream 173093 15741824 ~ 15745228 (-)
G115043 NA non-coding downstream 181494 15736529 ~ 15736827 (-)
G115042 NA non-coding downstream 182426 15735480 ~ 15735895 (-)
G115061 NA non-coding upstream 673 15922204 ~ 15922456 (-)
G115075 NA non-coding upstream 110401 16031932 ~ 16032227 (-)
G115175 zfyve9 non-coding upstream 249942 16171473 ~ 16171811 (-)
G115178 NA non-coding upstream 252730 16174261 ~ 16174553 (-)
G115179 NA non-coding upstream 253827 16175358 ~ 16175706 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other downstream 613711 15290082 ~ 15304610 (-)
G114680 NA other downstream 1121277 14795918 ~ 14797044 (-)
LOC120568687 NA other downstream 1300097 14613613 ~ 14618224 (-)
tfr1a NA other downstream 1949510 13949871 ~ 13968811 (-)
dis3l2 dis3l2 other downstream 2436096 13469531 ~ 13482225 (-)
G115164 btf3l4 other upstream 222629 16144160 ~ 16148121 (-)
cc2d1b cc2d1b other upstream 261123 16182654 ~ 16201698 (-)
mppe1 mppe1,LOC102781954 other upstream 395887 16317418 ~ 16327426 (-)
LOC120568735 LOC103355759,LOC101465864,LOC100696456,LOC102781658,LOC102293165 other upstream 409421 16330952 ~ 16335956 (-)
G115312 ralbp1,LOC102778314 other upstream 715577 16637108 ~ 16639812 (-)

Expression


Co-expression Network