LOC120568363 (ankrd12,LOC103396444,LOC102778611)


Basic Information

Item Value
gene id LOC120568363
gene name ankrd12,LOC103396444,LOC102778611
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16610376 ~ 16612206 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU155499
TAGAAATGCAGTATGTTTAATaagttgttgtgtgtttggttCACAGAGTGATGATGGCAAAACGTCAGTGAGAGACCGATTCAACGCCAGGCAGTTCATGTCCTGGCTACAAGATGTTGATGACAAGTTTGACAAACTGAAGACGTGTCTTCTGATGAGGCAGCAGCATGAGGCGGCGGCCCTGAATGCTGTGCAGCGTCTGGAGTGGCAGCTCAAGCTGCAGGAGTTGGACCTGGCCACTTACAAGTCCACCAGCATCTTCGAGATCCCCGAATTTTACATCCCACTCGTGGAGGTCAACGACGACTTTGACCTTACCCCGATATGAGTTGTTGAACAGACGGGCTTTGCCACAGCGGTGGCCAAATCACGGACACGAGAGGCAACCCGCACATtcgaggaaaaagaaagaaaaatgtgaaGCACTTGTGGCGGTAATACAAAAAGAGCATTTATTAAAGAGACAATTTTACTCCAGCGCTCTTACAGTCCAAACCAGCACGCCCACCAGGAGGACGGGGAACAAGGACTGACTGTTCCTCGTGTTCCTCGTACAGAAGGAGGCTACAGATCTAGCCGGAGCAGAGACCAAAAGCTTGGGCGGTGCGGTGCGGTGGTGCAGGGAGCTGCAGCAAGAAGGAAAGTGTGGATGTCAACCACCTTCTACTGCGCCTCATTAAGCAGGGTCACACAACTGAAAGTTCAATTGTTTTCAAAGTGAGTGTTCATACATTGTGTATAGACTGTGCTCTTAattttttaacttattttatacattaaaaaaaaaattgtgcatTTGTAAATAGCCATGTAATTATTGTTTCaaacttgtaaaaacaaaaaataatagatATTTTGATTGTAAACTTGTTCTGTCTCATGTTTTAAAGGACCAAAGTTGGTTTTTATATCGAGTGTCCTCTTCGTCCGTGatgttcttgttgttgttggcttAAAATCTTAAGCATGTGTTagcttttgttgtgtttttttgtttttactgtttCACCCTTCCTCATCTGGAGTTCCACGCCACAGCTGGTGTTTTTTGACTTTGGCAATTAAATGCTGTGCATGCATTGCGTTGTTTGTACTTTTTTCCTAAAAAAACTGTACTGTGGACTTAATGTGAGGTTTACTGAAGTGTTCCAGCTTTTTTTGCGCCATgtgttttgtcccttttttgcgGCCTCACTCCTCTGTTGTCCATTGTGTCTTGCACACATTCGAGTTTGTTGTGGCTtccaaggggaaaaaaaacatgtaattttACAGTTTCAATGTGAGATCACAACAAAAcctattttttcaacataatgccTTTTGAACGATGGTTCTAAAAAATGTCTATTTTAATATTTACTTGTTACATGA
>TU155501
TAGAAATGCAGTATGTTTAATaagttgttgtgtgtttggttCACAGAGTGATGATGGCAAAACGTCAGTGAGAGACCGATTCAACGCCAGGCAGTTCATGTCCTGGCTACAAGATGTTGATGACAAGTTTGACAAACTGAAGACGTGTCTTCTGATGAGGCAGCAGCATGAGGCGGCGGCCCTGAATGCTGTGCAGCGTCTGGAGTGGCAGCTCAAGCTGCAGGAGTTGGACCTGGCCACTTACAAGTCCACCAGCATCTTCGAGATCCCCGAATTTTACATCCCACTCGTGGAGGTCAACGACGACTTTGACCTTACCCCGATATGAGTTGTTGAACAGACGGGCTTTGCCACAGCGGTGGCCAAATCACGGACACGAGAGGCAACCCGCACATtcgaggaaaaagaaagaaaaatgtgaaGCACTTGTGGCGGTAATACAAAAAGAGCATTTATTAAAGAGACAATTTTACTCCAGCGCTCTTACAGTCCAAACCAGCACGCCCACCAGGAGGACGGGGAACAAGGACTGACTGTTCCTCGTGTTCCTCGTACAGAAGGAGGCTACAGATCTAGCCGGAGCAGAGACCAAAAGCTTGGGCGGTGCGGTGCGGTGGTGCAGGGAGCTGCAGCAAGAAGGAAAGTGTGGATGTCAACCACCTTCTACTGCGCCTCATTAAGCAGGGTCACACAACTGAAAGTTCAATTGTTTTCAAAGTGAGTGTTCATACATTGTGTATAGACTGTGCTCTTAattttttaacttattttatacattaaaaaaaaaattgtgcatTTGTAAATAGCCATGTAATTATTGTTTCaaacttgtaaaaacaaaaaataatagatATTTTGATTGTAAACTTGTTCTGTCTCATGTTTTAAAGGACCAAAGTTGGTTTTTATATCGAGTGTCCTCTTCGTCCGTGatgttcttgttgttgttggcttAAAATCTTAAGCATGTGTTagcttttgttgtgtttttttgtttttactgtttCACCCTTCCTCATCTGGAGTTCCACGCCACAGCTGGTGTTTTTTGACTTTGGCAATTAAATGCTGTGCATGCATTGCGTTGTTTGTACTTTTTTCCTAAAAAAACTGTACTGTGGACTTAATGTGAGGTTTACTGAAGTGTTCCAGCTTTTTTTGCGCCATgtgttttgtcccttttttgcgGCCTCACTCCTCTGTTGTCCATTGTGTCTTGCACACATTCGAGTTTGTTGTGGCTtccaaggggaaaaaaaacatgtaattttACAGTTTCAATGTGAGATCACAACAAAAcctattttttcaacataatgccTTTTGAAC
>XM_039815835.1
cgctCTAGTATTTcctacctggagcagatgaccaatcatagaaggccgGAGAATGCCGGCTTGGAGTTGCATAACAATGAACAGAGAATAGAAGAAATTTTTTTAAACCggagcgttcagaacagttttagctcacagggatttctctAAAATACCTCATTATTCGAAGTTTTGGCCACgtttttaacatgaaaatccgacTTTATAACATTGTAGTCATGACAGAAAATatggaaaagcataataggtcaCTTTTAATGATAATGTATAGAAATGCAGTATGTTTAATaagttgttgtgtgtttggttCACAGAGTGATGATGGCAAAACGTCAGTGAGAGACCGATTCAACGCCAGGCAGTTCATGTCCTGGCTACAAGATGTTGATGACAAGTTTGACAAACTGAAGACGTGTCTTCTGATGAGGCAGCAGCATGAGGCGGCGGCCCTGAATGCTGTGCAGCGTCTGGAGTGGCAGCTCAAGCTGCAGGAGTTGGACCTGGCCACTTACAAGTCCACCAGCATCTTCGAGATCCCCGAATTTTACATCCCACTCGTGGAGGTCAACGACGACTTTGACCTTACCCCGATATGAGTTGTTGAACAGACGGGCTTTGCCACAGCGGTGGCCAAATCACGGACACGAGAGGCAACCCGCACATtcgaggaaaaagaaagaaaaatgtgaaGCACTTGTGGCGGTAATACAAAAAGAGCATTTATTAAAGAGACAATTTTACTCCAGCGCTCTTACAGTCCAAACCAGCACGCCCACCAGGAGGACGGGGAACAAGGACTGACTGTTCCTCGTGTTCCTCGTACAGAAGGAGGCTACAGATCTAGCCGGAGCAGAGACCAAAAGCTTGGGCGGTGCGGTGCGGTGGTGCAGGGAGCTGCAGCAAGAAGGAAAGTGTGGATGTCAACCACCTTCTACTGCGCCTCATTAAGCAGGGTCACACAACTGAAAGTTCAATTGTTTTCAAAGTGAGTGTTCATACATTGTGTATAGACTGTGCTCTTAattttttaacttattttatacattaaaaaaaaaattgtgcatTTGTAAATAGCCATGTAATTATTGTTTCaaacttgtaaaaacaaaaaataatagatATTTTGATTGTAAACTTGTTCTGTCTCATGTTTTAAAGGACCAAAGTTGGTTTTTATATCGAGTGTCCTCTTCGTCCGTGatgttcttgttgttgttggcttAAAATCTTAAGCATGTGTTagcttttgttgtgtttttttgtttttactgtttCACCCTTCCTCATCTGGAGTTCCACGCCACAGCTGGTGTTTTTTGACTTTGGCAATTAAATGCTGTGCATGCATTGCGTTGTTTGTACTTTTTTCCTAAAAAAACTGTACTGTGGACTTAATGTGAGGTTTACTGAAGTGTTC

Function

symbol description
ankrd12 Is expressed in central nervous system; eye; and telencephalon. Orthologous to human ANKRD12 (ankyrin repeat domain 12).

NR:

description
hypothetical protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155499 False 1374 lncRNA 0.42 2 16610644 16612206
TU155501 False 1329 lncRNA 0.43 2 16610644 16612161
XM_039815835.1 True 1417 mRNA 0.42 2 16610376 16611981

Neighbor

gene id symbol gene type direction distance location
ankrd12 ankrd12,LOC102778611 coding upstream 913 16562196 ~ 16609463 (+)
ndufv2 ndufv2 coding upstream 49948 16553745 ~ 16560428 (+)
rab12 rab12 coding upstream 163834 16437581 ~ 16446542 (+)
LOC120568416 piezo2 coding upstream 180980 16344648 ~ 16429396 (+)
LOC120568300 gnal,LOC106520735 coding upstream 296575 16252963 ~ 16313801 (+)
twsg1a twsg1 coding downstream 1368 16613574 ~ 16628872 (+)
ralbp1 ralbp1,LOC102778314 coding downstream 17474 16629680 ~ 16639812 (+)
rab31 rab31,LOC108232866,LOC107383545 coding downstream 28608 16640814 ~ 16649143 (+)
vapal vapa coding downstream 38961 16651167 ~ 16679372 (+)
rheb rheb,LOC106516909,LOC108232948,LOC106592571,LOC106596806 coding downstream 420670 17032876 ~ 17039104 (+)
G115295 NA non-coding upstream 1834 16606703 ~ 16608542 (+)
G115223 NA non-coding upstream 178721 16430161 ~ 16431655 (+)
G115208 NA non-coding upstream 231857 16289237 ~ 16378519 (+)
G115207 NA non-coding upstream 341547 16262657 ~ 16268829 (+)
G115136 NA non-coding upstream 360729 16242987 ~ 16249647 (+)
G115350 LOC104967252 non-coding downstream 148229 16760435 ~ 16821676 (+)
G115404 NA non-coding downstream 545422 17157628 ~ 17158200 (+)
G115437 LOC101466820,LOC102797643,LOC103353954,LOC100700019 non-coding downstream 556367 17168573 ~ 17169818 (+)
G115442 LOC103353955 non-coding downstream 570946 17183152 ~ 17186653 (+)
G115445 NA non-coding downstream 592457 17204663 ~ 17210211 (+)
LOC120568419 LOC102779359 other upstream 82694 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 381825 16226307 ~ 16228551 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other upstream 688845 15865586 ~ 15921531 (+)
st6galnac3 st6galnac3 other upstream 767282 15764683 ~ 15843094 (+)
slc35a3b LOC103357859,LOC104957008,LOC101481522,LOC102792347 other upstream 1041882 15554471 ~ 15568494 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other downstream 794291 17406497 ~ 17483553 (+)
LOC120567767 NA other downstream 1415074 18027280 ~ 18029895 (+)
G115729 NA other downstream 1692943 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 1954427 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 2048223 18660429 ~ 18674140 (+)

Expression


Co-expression Network