G115350 (LOC104967252)


Basic Information

Item Value
gene id G115350
gene name LOC104967252
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16760435 ~ 16821676 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU155573
ACGCGTTCAGTACAcactttcattaaaaaaaaataaaataaaggaattgtgtttctgtccagcaggggggtgggggtggagggaGACTGTTGCAGTCGAATTACAAGAGATCGCATGAGACTGCCAGGAGCGTTACAGTGAAGGTTTTTAAGCCTTGTCATTACGAGTTGAGACTATAATATCCGGtctgcgtgcacacacacgcacatctgCTGACCTTTTCCCTGCAGGGGGAGCGGAGCTGAAATGACAACAGCATGATGCATTAGCTGTAAGTGCTACAGAAGCAGGGCTGTCTGTACCGGTGAGAAGAAGTGCTGATGGGAAAAGCAGCATGCCCAAAAATGGAGACCAGTTAACTAGACTAAAACGGACAGGGCTGGGACCAGGACTGGGACCTTGTTGTCTTACCTGGGTCAGTCCTCCCCATCCTCTGGCGTGATCTCTGTCTCTTTATGTACCACTACTTTGGTCACTGACATGTCAGGATGCTGTTCTTTAGCCTCCTTTATGGCCTGAGCCAGAGCCTGATCATGGTCGATGTCTGTATCTCCTGTGATGACGATCCTTTTCTCAATTCTCGTCTCTGATATTCCTCCTTTGACCGTCTTTGTGATGTGTGTGGTTGTCGTGGTGCTGGAGGTTTCCGAGGTGATGGTCTGAGCACTCAGCAACACCCCGGGGTCTACGTCTCCATTAGTGTCAACCTCTGCAGACTCATAAGTGATcgtttttgtctctgtgtggactACAGGCACCTCTTTGGCTCCCACCTCCATCGCGTCAAGACTCGTTGGCCCTGTCGACTCCACTGAAGCTGCAAA

Function

NR:

description
PREDICTED: band 4.1-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155573 True 824 lncRNA 0.50 6 16760435 16821676

Neighbor

gene id symbol gene type direction distance location
vapal vapa coding upstream 81063 16651167 ~ 16679372 (+)
rab31 rab31,LOC108232866,LOC107383545 coding upstream 111292 16640814 ~ 16649143 (+)
ralbp1 ralbp1,LOC102778314 coding upstream 120623 16629680 ~ 16639812 (+)
twsg1a twsg1 coding upstream 131563 16613574 ~ 16628872 (+)
ankrd12 ankrd12,LOC102778611 coding upstream 150972 16562196 ~ 16609463 (+)
rheb rheb,LOC106516909,LOC108232948,LOC106592571,LOC106596806 coding downstream 211200 17032876 ~ 17039104 (+)
LOC120567614 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 coding downstream 221385 17043061 ~ 17045062 (+)
LOC120568716 acvr2b,LOC106516905,LOC108232890 coding downstream 226018 17047694 ~ 17060749 (+)
LOC120568635 NA coding downstream 243257 17064933 ~ 17095824 (+)
LOC120568298 LOC103353952,LOC100690840,LOC102305671 coding downstream 275594 17097270 ~ 17139546 (+)
G115295 NA non-coding upstream 151893 16606703 ~ 16608542 (+)
G115223 NA non-coding upstream 328780 16430161 ~ 16431655 (+)
G115208 NA non-coding upstream 381916 16289237 ~ 16378519 (+)
G115207 NA non-coding upstream 491606 16262657 ~ 16268829 (+)
G115136 NA non-coding upstream 510788 16242987 ~ 16249647 (+)
G115404 NA non-coding downstream 335952 17157628 ~ 17158200 (+)
G115437 LOC101466820,LOC102797643,LOC103353954,LOC100700019 non-coding downstream 346897 17168573 ~ 17169818 (+)
G115442 LOC103353955 non-coding downstream 361476 17183152 ~ 17186653 (+)
G115445 NA non-coding downstream 382987 17204663 ~ 17210211 (+)
G115446 NA non-coding downstream 396234 17217910 ~ 17224738 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 148229 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 232753 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 531884 16226307 ~ 16228551 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other upstream 838904 15865586 ~ 15921531 (+)
st6galnac3 st6galnac3 other upstream 917341 15764683 ~ 15843094 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other downstream 584821 17406497 ~ 17483553 (+)
LOC120567767 NA other downstream 1205604 18027280 ~ 18029895 (+)
G115729 NA other downstream 1483473 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 1744957 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 1838753 18660429 ~ 18674140 (+)

Expression


Co-expression Network