G115404


Basic Information

Item Value
gene id G115404
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17157628 ~ 17158200 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU155669
AAAGGCATCAAACGGACCAGAGTAATTAcatgtttcatttaaatcatGGGTCATGGCTCTAAACAAAGTGTGTTGAGTACGGcctctgtttcatttctgtggactGTTTCACATTCAGTATTCTAAATTAGGCTGGGTTTATTTGCTGTTGCGGTGGATATTAATATAAATTTGAACAAAGCTGTTACCTAGCAACACAATGAACAGTACACTGTACATCTGTTTCATTTGAGTGGGCACCACTAAAACAAAGGGGAAAACAAACTAATTCTGGCAAGACATCAAGGCATTTCATATTGTGTCGACTAAAGCTAGCATACCATACTTATGTTATTTAACTGCAAGGATTTGTCTGTTTATGTTGGCACTGTTAACGAGAGGTCCCTTCACCCCCTTGCTTTTCTACTCTGTTGGTGGGCCGTCTTTATTAATAAATCAATTCCTGCTGGAGTTTTATTATGTTTAATGCTCCCCACATGTTGTCTGTCATGTTGTCTGTCATGTTGCTGTGTATTTGTCATGTCCGCTGCGCGTCAGACGGTTCACACCTCGCCgccgtccattaatacctga

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU155669 True 573 lncRNA 0.40 1 17157628 17158200

Neighbor

gene id symbol gene type direction distance location
LOC120568298 LOC103353952,LOC100690840,LOC102305671 coding upstream 18082 17097270 ~ 17139546 (+)
LOC120568635 NA coding upstream 61804 17064933 ~ 17095824 (+)
LOC120568716 acvr2b,LOC106516905,LOC108232890 coding upstream 96879 17047694 ~ 17060749 (+)
LOC120567614 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 coding upstream 112566 17043061 ~ 17045062 (+)
rheb rheb,LOC106516909,LOC108232948,LOC106592571,LOC106596806 coding upstream 118524 17032876 ~ 17039104 (+)
amy2a NA coding downstream 158913 17317113 ~ 17325659 (+)
dcaf8 dcaf8,LOC102795666 coding downstream 385470 17543670 ~ 17552930 (+)
lrrc42 lrrc42 coding downstream 413377 17571577 ~ 17574473 (+)
tceanc2 tceanc2 coding downstream 422459 17580659 ~ 17583761 (+)
LOC120567749 LOC103353067 coding downstream 629585 17787785 ~ 17967693 (+)
G115350 LOC104967252 non-coding upstream 335952 16760435 ~ 16821676 (+)
G115295 NA non-coding upstream 549086 16606703 ~ 16608542 (+)
G115223 NA non-coding upstream 725973 16430161 ~ 16431655 (+)
G115208 NA non-coding upstream 779109 16289237 ~ 16378519 (+)
G115207 NA non-coding upstream 888799 16262657 ~ 16268829 (+)
G115437 LOC101466820,LOC102797643,LOC103353954,LOC100700019 non-coding downstream 10373 17168573 ~ 17169818 (+)
G115442 LOC103353955 non-coding downstream 24952 17183152 ~ 17186653 (+)
G115445 NA non-coding downstream 46463 17204663 ~ 17210211 (+)
G115446 NA non-coding downstream 59710 17217910 ~ 17224738 (+)
G115488 NA non-coding downstream 326206 17484406 ~ 17484811 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 545422 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 629946 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 929077 16226307 ~ 16228551 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other upstream 1236097 15865586 ~ 15921531 (+)
st6galnac3 st6galnac3 other upstream 1314534 15764683 ~ 15843094 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other downstream 248297 17406497 ~ 17483553 (+)
LOC120567767 NA other downstream 869080 18027280 ~ 18029895 (+)
G115729 NA other downstream 1146949 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 1408433 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 1502229 18660429 ~ 18674140 (+)

Expression


Co-expression Network