G115433 (abca4,LOC108232920,LOC100690840,LOC102789304,LOC102216210,LOC101466350)


Basic Information

Item Value
gene id G115433
gene name abca4,LOC108232920,LOC100690840,LOC102789304,LOC102216210,LOC101466350
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17133873 ~ 17135813 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU155702
ATCAAACTGAGGGCAGTATCCCATGTTCTGGTGCACGTCCAGAATCTCTGTCCGGATGCTGTAACCAGCCACAGTAGCCTCACCGGAGCTGACATCTGTGTCACCAGTCAGCATTTTGAAGGTTGTCGTCTTTCCAGCTCCATTAACTCCCAAAAGACCAAAGCACTCTCCTGCAGGGACTCCCACACATATCCGGTCCACAGCTGCCCTCTTCCTGCCCACATACGTCTTAGAGAGGTCTCTGATCTGCAGGACGTCTGTCTTGCTCCCTCCATTATAAAttctctgcctctctgctgcCACTTCACCATCCTCATCTCGTATTGAAGTCTGCTTGTAGTCTGATAACCAGTGGTCCAAGAAGAACCG

Function

symbol description
abca4 Enables 11-cis retinal binding activity; all-trans retinal binding activity; and phosphatidylethanolamine flippase activity. Involved in phospholipid translocation and retinal metabolic process. Located in cytoplasmic vesicle and endoplasmic reticulum. Implicated in fundus dystrophy and retinal degeneration (multiple).

NR:

description
PREDICTED: retinal-specific ATP-binding cassette transporter

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155702 True 369 lncRNA 0.51 5 17133873 17135813

Neighbor

gene id symbol gene type direction distance location
LOC120567671 lrrc30,LOC104932041,LOC103353948 coding downstream 111480 17020735 ~ 17022393 (-)
LOC120568369 ptprm,LOC102799796 coding downstream 118247 16847810 ~ 17015626 (-)
LOC120567917 tmem200c,LOC104967041 coding downstream 313839 16814692 ~ 16820034 (-)
LOC120568957 LOC103353943 coding downstream 379107 16751993 ~ 16754766 (-)
LOC120568912 apcdd1,LOC102777074 coding downstream 421609 16685480 ~ 16712264 (-)
LOC120569119 LOC101466820,LOC102797643,LOC103353954,LOC100700019 coding upstream 30078 17165891 ~ 17176411 (-)
LOC120568842 LOC103353955,LOC104931259 coding upstream 47349 17183162 ~ 17275789 (-)
LOC120567855 NA coding upstream 161242 17297055 ~ 17298924 (-)
LOC120569062 LOC103353959 coding upstream 356474 17492287 ~ 17542090 (-)
ndc1 ndc1 coding upstream 420167 17555980 ~ 17564537 (-)
G115430 LOC102789304,LOC101466350,LOC102216210,LOC102305671,LOC100690840 non-coding downstream 10815 17122722 ~ 17123058 (-)
G115429 NA non-coding downstream 12827 17119921 ~ 17121046 (-)
G115428 LOC103353952,LOC107089435 non-coding downstream 19129 17112716 ~ 17114744 (-)
G115391 NA non-coding downstream 94766 17036866 ~ 17039107 (-)
LOC120569046 NA non-coding downstream 309213 16823302 ~ 16824660 (-)
G115434 LOC103353952,LOC100690840 non-coding upstream 1941 17137754 ~ 17141217 (-)
G115435 NA non-coding upstream 28556 17164369 ~ 17164695 (-)
G115458 NA non-coding upstream 166451 17302264 ~ 17302558 (-)
LOC120568661 NA non-coding upstream 220538 17356351 ~ 17357209 (-)
G115563 dcaf8 non-coding upstream 412407 17548220 ~ 17552950 (-)
ly97.3 NA other downstream 24969 17039800 ~ 17108904 (-)
G115406 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 other downstream 88811 17043126 ~ 17045062 (-)
epb41l3b epb41l3,LOC102298622,LOC106534525 other downstream 321955 16756331 ~ 16811918 (-)
G115312 ralbp1,LOC102778314 other downstream 494061 16637108 ~ 16639812 (-)
LOC120568735 LOC103355759,LOC101465864,LOC100696456,LOC102781658,LOC102293165 other downstream 797917 16330952 ~ 16335956 (-)
LOC120568693 rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474 other upstream 917171 18052984 ~ 18058159 (-)
sppl2 sppl2b other upstream 1344857 18480670 ~ 18494488 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other upstream 1567251 18703064 ~ 18720587 (-)
G115941 NA other upstream 1709092 18844905 ~ 18846277 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other upstream 1796161 18931974 ~ 18935491 (-)

Expression


Co-expression Network