G115442 (LOC103353955)


Basic Information

Item Value
gene id G115442
gene name LOC103353955
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17183152 ~ 17186653 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU155712
ATGCAAACGATTGCAATGTGCATTTGGCAAAGCAccaaacatttatttcatttgtacataGGTTGTaaacatactgtaattacacaGGTTTGAAAGCGGCTCCGAAGTCTATGCTATCATAGCTTTAAGCTAGAGAGGTGGAGATGCAAACATATCATGATCAAAGTCAAATTTGATTCagagaaagaaagtgaaagagaTCACAGCACCTGGGCTCAGCAGAATCAATCACATGAACGGCAACACTTGGAGCCACTAATCCTCCAAATGGCGAAGGAAGGAGATATGTATAGGGCAGCGCAGAATCACAAAAAGAACATTAATCGTTTCTGCACTCAAATAGCCAACAATCCAATACAGGCATTTTTCAGAATCCagttttaatatttttgaatgaacAATTCAAGGCACATGAAACATTTTGTTCATTACAAATAAGAAAATCAACAGAGCTTTTGGACACTATTGGACAAATTTAACTCCACAGAAAATAAATTGTAAGTTAGCCACCACAAATAATGTTTAAACTTGATTGTGTTATCAATATATAAACACGGGTGAAGAGCCAAATATGTccacattttttaaaagaaactgAGGTACAATATAACATCTGGGTGAATAAGGTTTGGAAGAATAAGCTCtttcttaaaatatttatattactATATCATTTTATTATGGCTTAATATCCCGATGGACATACCAACTGGTGTCATTGTCATGAAAAAAGACAGAATGCTTTTAGAGTTGTGTTTTATGATCCAGTTGTGTTAGCTCTCATAAAAATCAAATATTGAAAGTTATATTATTTACAAAAGGATTATTTTGTACTTTACAAATTGGAATGTTTTCAATAGATATTCTTTTTAGCAAATTTGTTTTCAACACACATCAACTATATTCATTAGATTTATTTCTATATTGTTTaccaaatacttatttaaaCTTAAGAGCTGGGGAACATGCAAGATTTTAGGGTGGATTCAGAAAGGCACAATATtgtacacaataataataataataattacagttttatcaAAAAGCACTTTTTGTAGCACCTTGAGTGTTTTGTGATTCTGCACAAAAGCACCTCTGTGGTTTTATTCAGAGCAGCACCTGGAGCATCCAGAGAGGGAGGCGTGGTGGGAGGGGGAGGACAAGGGAGGATGGGGCTTGGGGTGAGTGGATCCTCTCTCTGTTGCCGAAGGTGCGCCACTGTACGCCACGGCATCAAATGTCCTTTTCCTGATGTCACTCCCATTACAACATGTAAGTTAAAGTCATGTGATTCTGGCCCTACAAGGGCGAGGAGTAGTTTCCCCTGGTCAGCGCTTTCATGACAGGGCCTAGGGGCACTCTTCTTCTCCGGGCTTGAGTGGATCTTCTCGggcaacaaaagaaaacacaggttTTTTTGCTTCACAGGGAGAGAAGGTAAAGGTTGTCGGATCTCAGCATGTGGGTGTTAATATGTACCCTCTGACCCTGTCCTTCAGCGGGGAGTAGGTGTGTGTCTAGCCGAGGAAACAGACAGGGCCCACCTCAAAGCCAAACCTCTGGTTGGATTCCCcaaagtcattcagcatgacgTCAATGATGGGCAACTGGTCGATGCGGGGAGTGTTGATCTCCATCACAGTCTTTGAATAGCCCTGCTTCAGCGAGCAGTTGTCCATCAGCGGCTTGATGAAGGGATTATTGTCGTAAGACATCTCCTCATCGTTGGAGCCCAGGAAGCGCAGCGCCTTGTCGTAGTTGTCGGCCTTGGCATCGTACCAGGCCACGGACTGATGGCAAATGTAGGTGAAGTTCTGCCGTGCTGAGGAGCTCAGCAGCTTCAGGAAGGTCATCTGCACTGTGTTGATGGTGTTTTCTGCCATGTCAACGTAGCTCAAAATTTTGCCACGTTTAAATTCACTGAACCATGAACCTGGAGACTCCTTGGGCCAGTTGGATATTCTAACTCCTACAGATTTCTTATCTGGGAAGATACACGTTTCTCCGCCTGCTGTGAAG

Function

NR:

description
PREDICTED: collagen alpha-1(XI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155712 True 2019 lncRNA 0.41 4 17183152 17186653

Neighbor

gene id symbol gene type direction distance location
LOC120568298 LOC103353952,LOC100690840,LOC102305671 coding upstream 43606 17097270 ~ 17139546 (+)
LOC120568635 NA coding upstream 87328 17064933 ~ 17095824 (+)
LOC120568716 acvr2b,LOC106516905,LOC108232890 coding upstream 122403 17047694 ~ 17060749 (+)
LOC120567614 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 coding upstream 138090 17043061 ~ 17045062 (+)
rheb rheb,LOC106516909,LOC108232948,LOC106592571,LOC106596806 coding upstream 144048 17032876 ~ 17039104 (+)
amy2a NA coding downstream 130460 17317113 ~ 17325659 (+)
dcaf8 dcaf8,LOC102795666 coding downstream 357017 17543670 ~ 17552930 (+)
lrrc42 lrrc42 coding downstream 384924 17571577 ~ 17574473 (+)
tceanc2 tceanc2 coding downstream 394006 17580659 ~ 17583761 (+)
LOC120567749 LOC103353067 coding downstream 601132 17787785 ~ 17967693 (+)
G115437 LOC101466820,LOC102797643,LOC103353954,LOC100700019 non-coding upstream 13334 17168573 ~ 17169818 (+)
G115404 NA non-coding upstream 24952 17157628 ~ 17158200 (+)
G115350 LOC104967252 non-coding upstream 361476 16760435 ~ 16821676 (+)
G115295 NA non-coding upstream 574610 16606703 ~ 16608542 (+)
G115223 NA non-coding upstream 751497 16430161 ~ 16431655 (+)
G115445 NA non-coding downstream 18010 17204663 ~ 17210211 (+)
G115446 NA non-coding downstream 31257 17217910 ~ 17224738 (+)
G115488 NA non-coding downstream 297753 17484406 ~ 17484811 (+)
G115506 NA non-coding downstream 371272 17557925 ~ 17559880 (+)
G115513 LOC103353967,LOC104931261,LOC102192286,LOC100692446,LOC101469749 non-coding downstream 378602 17565255 ~ 17565482 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 570946 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 655470 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 954601 16226307 ~ 16228551 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other upstream 1261621 15865586 ~ 15921531 (+)
st6galnac3 st6galnac3 other upstream 1340058 15764683 ~ 15843094 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other downstream 219844 17406497 ~ 17483553 (+)
LOC120567767 NA other downstream 840627 18027280 ~ 18029895 (+)
G115729 NA other downstream 1118496 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 1379980 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 1473776 18660429 ~ 18674140 (+)

Expression


Co-expression Network