LOC120567767


Basic Information

Item Value
gene id LOC120567767
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18027280 ~ 18029895 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU155940
GGGATGTTAAAACCTTCATGAGTTTAACTCCAAAATCTTTTAGAAAAACACATCAGCATTGGTtcgggaaaaaaagaaatacgaGTCGAGGGGCAAAGGTGTGTCGCGTTTATGGAAATATGATCCATGCACCTGAGTCCTTATAAGAGTGCCTCACCTCACCTGCACAGAGACAAGAAGAGAGCAACAATATACACCTGGAGCTTTACAGAGCTGCAACTACAGACTGCACCATGCGCTTCCCAACGCTGATCATCCTGCTGATCCTATCTTGTCTTTGCCTTGCACTGGCACAAACGACTTTTGACGACTGCTGTTTGAGGTATGTGAAAAGAATGAGCAAAGGCACTCAAAGACACGCAGTGACGTACAGATGGCAGGAGACAGACGGAGGCTGCAACATTCCTGCTATAATCTTCATCATGAAGAAGGGGAAGGAGTTTTGCACAGACCCCAGAGACACATGGGTCAAAAAACTGATGACAAAGATtgacgaaaaaagtcaaaaaatggACCACAAGAAACACAGTAAGCCTCAATGGTCGAACAGAGGCTGAGGGTGACCGCCTGCGACAATGGCCCCCAGTCATCTTTCCTCAATCTGCCAAATCTTATCAAGCAACAAATGGTTTTATGGTGTCTTACTGGAAGGCAGTCGAGGAAGCTGGCCAAGGAAATCTTGTAGCATCACTTTTACTTTCACTCTGCAGTCAGATAAAGGTCAAAGCTTGGGTAGAATCACAGCAACACTTGTTCAGGGTTGGACTGCTAATGCCGACTGGCCACGACACACATATAATGCCTTCTATAGCATGGCTGCTGTTTTCACGAGGTATTCAATAAGCTGTTTAATTAATGGTGATGGAGTGTAAATGATAataatatgtatgtaatatTTAGAGTATTTCTTGCATGATGTGTCTAAATGTCCATCAAATACTTGTTTATATGCAAACACTAATTGTTAAATGTTAATGCCTTTTTGAAATGCGTGTCATGGAAAAAGGTGAAACTCCTGTCTTAATTTCTTCTAAATAgtttaaatgtctgtttttcCCTCCGTACGTTTTGTACTTTATTATGTGTTCTCATAAAAACATTATTACAATAAACTTTCTCATCACCTCCCTCTCAGTGTTGTTTAAAAGTTTATGATTATGttcacatacattttttatacaGTGTTTTCCTCTTGGC
>XM_039814778.1
acgaGTCGAGGGGCAAAGGTGTGTCGCGTTTATGGAAATATGATCCATGCACCTGAGTCCTTATAAGAGTGCCTCACCTCACCTGCACAGAGACAAGAAGAGAGCAACAATATACACCTGGAGCTTTACAGAGCTGCAACTACAGACTGCACCATGCGCTTCCCAACGCTGATCATCCTGCTGATCCTATCTTGTCTTTGCCTTGCACTGGCACAAACGACTTTTGACGACTGCTGTTTGAGGTATGTGAAAAGAATGAGCAAAGGCACTCAAAGACACGCAGTGACGTACAGATGGCAGGAGACAGACGGAGGCTGCAACATTCCTGCTATAATCTTCATCATGAAGAAGGGGAAGGAGTTTTGCACAGACCCCAGAGACACATGGGTCAAAAAACTGATGACAAAGATtgacgaaaaaagtcaaaaaatggACCACAAGAAACACAGTAAGCCTCAATGGTCGAACAGAGGCTGAGGGTGACCGCCTGCGACAATGGCCCCCAGTCATCTTTCCTCAATCTGCCAAATCTTATCAAGCAACAAATGGTTTTATGGTGTCTTACTGGAAGGCAGTCGAGGAAGCTGGCCAAGGAAATCTTGTAGCATCACTTTTACTTTCACTCTGCAGTCAGATAAAGGTCAAAGCTTGGGTAGAATCACAGCAACACTTGTTCAGGGTTGGACTGCTAATGCCGACTGGCCACGACACACATATAATGCCTTCTATAGCATGGCTGCTGTTTTCACGAGGTATTCAATAAGCTGTTTAATTAATGGTGATGGAGTGTAAATGATAataatatgtatgtaatatTTAGAGTATTTCTTGCATGATGTGTCTAAATGTCCATCAAATACTTGTTTATATGCAAACACTAATTGTTAAATGTTAATGCCTTTTTGAAATGCGTGTCATGGAAAAAGGTGAAACTCCTGTCTTAATTTCTTCTAAATAgtttaaatgtctgtttttcCCTCCGTACGTTTTGTACTTTATTATGTGTTCTCATAAAAACATTATTACAATAAACTTTCTCATCACCTCCCTCTCA

Function

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0060326 cell chemotaxis biological_process
GO:0005576 extracellular region cellular_component
GO:0008009 chemokine activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155940 True 1197 TUCP 0.41 5 18027280 18029895
XM_039814778.1 False 1054 mRNA 0.42 5 18027360 18029832

Neighbor

gene id symbol gene type direction distance location
LOC120569107 nrtn,LOC103353066 coding upstream 41740 17975976 ~ 17985540 (+)
larp6b NA coding upstream 53724 17972055 ~ 17973556 (+)
LOC120567749 LOC103353067 coding upstream 59587 17787785 ~ 17967693 (+)
tceanc2 tceanc2 coding upstream 443519 17580659 ~ 17583761 (+)
lrrc42 lrrc42 coding upstream 452807 17571577 ~ 17574473 (+)
im:7138239 LOC104950317,LOC103353072 coding downstream 6057 18035952 ~ 18041729 (+)
LOC120567609 LOC103353062,LOC104950308 coding downstream 13502 18043397 ~ 18045228 (+)
cib3 cib3,LOC107687907 coding downstream 18171 18048066 ~ 18052429 (+)
ap1m1 ap1m1,LOC107696211 coding downstream 45212 18075107 ~ 18090043 (+)
LOC120568288 klf2,LOC104966780 coding downstream 118003 18147898 ~ 18149844 (+)
G115600 NA non-coding upstream 7170 18019905 ~ 18020110 (+)
G115599 ranbp3,LOC102787870 non-coding upstream 7666 18016563 ~ 18019614 (+)
G115585 NA non-coding upstream 59238 17967740 ~ 17968042 (+)
G115516 NA non-coding upstream 447691 17578910 ~ 17579589 (+)
G115513 LOC103353967,LOC104931261,LOC102192286,LOC100692446,LOC101469749 non-coding upstream 461798 17565255 ~ 17565482 (+)
G115633 LOC102219409,LOC104931433,LOC103479775,LOC104950312,LOC105022474 non-coding downstream 22973 18052868 ~ 18058243 (+)
G115636 tpm4,LOC107383605,LOC103146061,LOC102218802,LOC103479776 non-coding downstream 30814 18060709 ~ 18065238 (+)
G115660 LOC102296215,LOC102788438,LOC100704618 non-coding downstream 141784 18171679 ~ 18174071 (+)
LOC120568296 NA non-coding downstream 202722 18232617 ~ 18233706 (+)
G115690 NA non-coding downstream 203848 18233743 ~ 18234058 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 543727 17406497 ~ 17483553 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 1415074 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 1499598 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 1798729 16226307 ~ 16228551 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other upstream 2105749 15865586 ~ 15921531 (+)
G115729 NA other downstream 275254 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 536738 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 630534 18660429 ~ 18674140 (+)
LOC120568911 NA other downstream 690470 18720365 ~ 18725447 (+)
LOC120568770 NA other downstream 987144 19017039 ~ 19052242 (+)

Expression


Co-expression Network