LOC120568693 (rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474)


Basic Information

Item Value
gene id LOC120568693
gene name rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18052984 ~ 18058159 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU155949
TCCGCAATAATATCAAGTATGGCGAAGACATACGACTATTTGTTTAAATTACTGTTAATCGGCGACTCTGGTGTCGGGAAGACCTGTGTCCTCTTCAGGTTTTCAGAAGACGCCTTCAACTCAACGTTTATCTCAACTATAGGCATTGATTTCAAGATCAGAACAATAGAGCTTGACGGCAAGAAGATAAAGTTACAGATATGggatACAGCTGGACAGGAGCGCTTCCGAACAATCACAACAGCCTACTACAGAGTGCTTGACTGGTAGAGGACTCCACCAGGATCATTGTCCAGATGTTTCTTTTCACACAAAAGACAGGCTCTTACTTCTGATGTTTAGTCTTGTTGTACTACACACTCATATTTCACGCAGCCGGTAGCCCAACCAAGgatgacaaaacaaatatattttattagtacctttttcctttttaagtGATGCAGGTCAACCAGAGACTGATTGGCTTGAACTCTAGTGAACGGAGTTGCACatgctttcattttcatttcagctgTTGAGAATCATAATACGCATCAGGCAGTCAAGGATCAGAGAGGAATTAGATTGAAAGGTTTTCTATTTGAGTTCTGCTTTTTGGTTTGCCTGTAGTCCTTGACAACCATTTGATGCAACTTATAATGCGTGTTTCATCCTGCCTTGATCATTACACACTGCCACCAACTCTTTTTCGGCAATAACTTTCAGGTGCAGTTTGGCAACACAAAACCTAAAAATACAATCCAGATCTGTCTCTTTAGATAAAGTTCTAATGTCAAATAATCAGCAGAACATTGTTGTTACCCATGTGTAAGTACACCATTAAGGAAAGTATCAGGATGTGCACGCTGTATAATATAAACAATTCTCCAAAATTGAGTACGGTACAGTACaacaattgtttttattatcatttGTTCTGCCACTTAATTTCTTGATTAATCTATACATTGTTccatctataaaatgtcagaaaatattgaaaaatgcctGTTAAAGTTTCCTAAAGCCCAAATTGACGACTTAAgatatcttgttttgtccaagtAAGTCCAAAACCCCAAACCATTATAAAACCAAATCATAATAAAGCAACGAAAGCAGCAATCCTCACATTCGAGAAGCTGGAGCTTGCGaatgtttggtgtttttgcTTGGAAGTTGACTGAAATTAATCATCAATATAGtctgcattttattttctctgttgACTTATTGTTTCTGCTCCAAAGATTACTTTAAAGTGTTCCCTTGTAAATagtttttgaaggttttgtagCAGCTCTGATTCACAGTCAAGCTAAATGACGTCTCTGGTCGTCTCTGATCAGCAGTTAAAAATCACTCTTGAAGTTTCGCACTGTAAGCCCCTTCTCCTGCTATCCATGCAGCTCTCCTTGCACTTTACCAGTAACTCGTGTTTTGTGTGTAGTCTGTGCCAAGTGATAGTTTTGCAATACAATTACTtagttaaaaaatgttttcagtctTGGTTATATAATGGGTATAATTCCTAAATGTTTTACTAGACCTACTTATAAGTAATGACTTAATCTCCTTTGTTATTTCACTGCGAGTGATCTGCTGTCCTGGTATTAGTGCACTGAAAACATTGCCCTAATGTGAGGGTGCAAAATTAACTTGTTTTGTCCACtggccaaatggctagtgaatgctcaaattttaccagccactcaatagaaaCCATTTGTTAGCCACTTGCATCTTTTACCAGTATTTGCCTAgtggatggtgctaattttgtaCCCTGCCTAAtgtacttatatatatatataatttataaaaaggaaaaataatttGCCAGCCTCTGTTTCTATGTTACTGCCCTGCCAAATTATAGTTTAAAAGTGATGTTTTTTGGCTTTTCAATGAAAGCTGGCTTGTCCAAAGCTGAAAGGTGCTCCCACTAGTATTGTACAATTTCTTGTTTATATTTGATTGTAGCCCTTTAGTTTGACAGCTAGGTGGCACCAGAGGCACAGTATGCATCAAAGGTGACCACCTGAATTCAAATTATAATCAGTATTTTATTAGGATTGCGAGCCACAGGGAACTAGACCTGTGCAATACAAACATGTACCCACTATTTAACATCGACGTTGAGTCTCAATCTATTTCCACTGTTCCTCATGTTTCCTTCCTACATTTGTTACTAGTCTGAAAATCAAACTCCTATATGCACAATATCGAGGGAGGATCTGCTTTTCTTGCCTgcgtcctttttttttttttaaatatcaaataATTTGGGACCTCATGACTACCATGGCCATTTGTCTTAACCGCTAATACTCAGTTCTGTCATAGGTGAGCTATGCATTGTGAATCTTGGACCTGTGCATAtttgtgtaatgtaattttcAGACATACTTGTAGACCTGTACAGTTGAATGTAtgggcttttttgttttgtgtcatcCACTGAGCCAAAAACAGGACTCTGTAGAAATGGCATTGCTACAACAATAGGAGTGGGATTTAGCATGATGGAAGATTAAGTAGAAAGAGTCTGGATGTTGAAATGTGGAGATAGTGCTGTTTTCTCATTTGTGTAATAATGTAGCTTTTAAGTCATAGACAGAAACGTAGGAAGCAGACTTTTGTGGGACTCAAACTGCATAatttacagctgaaatgattctCCCTCtttgatttagtttttaaatcatATCCTTTAATATAGTGTACATCCCTTTTTACAGCCATATTTTCATTCCATTCAGTGTGA
>XM_039816361.1
agcagggggcgacacttCAGCATATTCACATCGCTGCTTCGCCGGGCGGGATTTCCGCAATAATATCAAGTATGGCGAAGACATACGACTATTTGTTTAAATTACTGTTAATCGGCGACTCTGGTGTCGGGAAGACCTGTGTCCTCTTCAGGTTTTCAGAAGACGCCTTCAACTCAACGTTTATCTCAACTATAGGCATTGATTTCAAGATCAGAACAATAGAGCTTGACGGCAAGAAGATAAAGTTACAGATATGggatACAGCTGGACAGGAGCGCTTCCGAACAATCACAACAGCCTACTACAGAGGAGCAATGGGCATCATGCTTGTCTACGACATCACCAACGAGAAGTCTTTTGAGAATATCAAGAACTGGATAAGGAACATAGAGGAGcATGCATCCTCTGATGTTGAGAAGATGGTCCTTGGCAACAAGTGTGACATCAACGACAAGCGGCAGGTGTCCAAAGACAGGGGGGAGAAGCTCGCATTAGAGTATGGAATAAAATTCATGGAGACCAGTGCAAAGGCCAACATCAATGTGGAAAATGCATTTTTGACCCTCGCCAGAGACATCAAATCAAAAATGGACACAAAATTGgaGGGCAACATGCCGCAGGGGAGCAGTCACGGAGTCAAGATCTCAGAGCCTCAGAAAAAGACAAGCTTCTTCCGCTGTAGCCTACTCTGAGGGCCGAGGCCTTCGATACTGGCTGCCAGCTGGCTGGACATAAATGGACTGTGCTTGCTCTTAGCACTTCcttctccttccttctttctacccaTCCATGGCCTGTCCTCCCAGTCCACACAAACCATTATATTCCCAGTAAGCAGAGGACTTTTCCTCTCATCTTCTGAAAGCTTCCAATGCTGCATCTCTTCCATTTTAAGGAGATCTGTTGTCTTCATGGGTCCGAGTGCTTGACTGGTAGAGGACTCCACCAGGATCATTGTCCAGATGTTTCTTTTCACACAAAAGACAGGCTCTTACTTCTGATGTTTAGTCTTGTTGTACTACACACTCATATTTCACGCAGCCGGTAGCCCAACCAAGgatgacaaaacaaatatattttattagtacctttttcctttttaagtGATGCAGGTCAACCAGAGACTGATTGGCTTGAACTCTAGTGAACGGAGTTGCACatgctttcattttcatttcagctgTTGAGAATCATAATACGCATCAGGCAGTCAAGGATCAGAGAGGAATTAGATTGAAAGGTTTTCTATTTGAGTTCTGCTTTTTGGTTTGCCTGTAGTCCTTGACAACCATTTGATGCAACTTATAATGCGTGTTTCATCCTGCCTTGATCATTACACACTGCCACCAACTCTTTTTCGGCAATAACTTTCAGGTGCAGTTTGGCAACACAAAACCTAAAAATACAATCCAGATCTGTCTCTTTAGATAAAGTTCTAATGTCAAATAATCAGCAGAACATTGTTGTTACCCATGTGTAAGTACACCATTAAGGAAAGTATCAGGATGTGCACGCTGTATAATATAAACAATTCTCCAAAATTGAGTACGGTACAGTACaacaattgtttttattatcatttGTTCTGCCACTTAATTTCTTGATTAATCTATACATTGTTccatctataaaatgtcagaaaatattgaaaaatgcctGTTAAAGTTTCCTAAAGCCCAAATTGACGACTTAAgatatcttgttttgtccaagtAAGTCCAAAACCCCAAACCATTATAAAACCAAATCATAATAAAGCAACGAAAGCAGCAATCCTCACATTCGAGAAGCTGGAGCTTGCGaatgtttggtgtttttgcTTGGAAGTTGACTGAAATTAA

Function

symbol description
rab8a Predicted to enable GTP binding activity and GTPase activity. Involved in melanosome transport. Acts upstream of or within photoreceptor cell outer segment organization. Predicted to be active in cytoplasmic vesicle; dendritic spine; and plasma membrane. Orthologous to human RAB8A (RAB8A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-8A isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155949 True 2749 lncRNA 0.37 4 18052984 18058106
XM_039816361.1 False 1841 mRNA 0.42 8 18054558 18058159

Neighbor

gene id symbol gene type direction distance location
ranbp3b ranbp3 coding downstream 33088 17999900 ~ 18019896 (-)
cdcp2 cdcp2,LOC103375059 coding downstream 461619 17583790 ~ 17591365 (-)
tmem59 tmem59 coding downstream 473409 17575306 ~ 17579575 (-)
yipf1 yipf1 coding downstream 481596 17567352 ~ 17571388 (-)
zgc:113691 LOC103353967,LOC104931261,LOC102192286 coding downstream 485938 17564711 ~ 17567046 (-)
LOC120568865 tpm4,LOC107383605,LOC102218802,LOC103146061,LOC103479776,LOC100703626,LOC102199996,LOC106537044,LOC101474423,LOC102789012,LOC106914771,LOC108232925,LOC106936184 coding upstream 2536 18060695 ~ 18070437 (-)
LOC120568287 LOC103353056 coding upstream 92957 18151116 ~ 18170489 (-)
LOC120568289 LOC102296215,LOC102788438,LOC102202758,LOC101476248,LOC100704618 coding upstream 113490 18171649 ~ 18175326 (-)
LOC120568294 LOC104961359,LOC103353055,LOC100705071,LOC102788160 coding upstream 178631 18236790 ~ 18244258 (-)
LOC120569106 NA coding upstream 242253 18300412 ~ 18306617 (-)
G115624 NA non-coding downstream 85292 17965813 ~ 17967692 (-)
G115577 NA non-coding downstream 444727 17607456 ~ 17608257 (-)
G115570 lrrc42 non-coding downstream 478859 17573463 ~ 17574125 (-)
G115568 NA non-coding downstream 479855 17572897 ~ 17573129 (-)
G115563 dcaf8 non-coding downstream 500034 17548220 ~ 17552950 (-)
G115640 NA non-coding upstream 16909 18075068 ~ 18076412 (-)
G115641 NA non-coding upstream 18381 18076540 ~ 18077059 (-)
G115644 ap1m1,LOC107750937 non-coding upstream 23039 18081198 ~ 18083844 (-)
G115691 NA non-coding upstream 174709 18232868 ~ 18234515 (-)
G115710 NA non-coding upstream 201765 18259924 ~ 18260284 (-)
ly97.3 NA other downstream 944080 17039800 ~ 17108904 (-)
G115406 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 other downstream 1007922 17043126 ~ 17045062 (-)
epb41l3b epb41l3,LOC102298622,LOC106534525 other downstream 1241066 16756331 ~ 16811918 (-)
G115312 ralbp1,LOC102778314 other downstream 1413172 16637108 ~ 16639812 (-)
LOC120568735 LOC103355759,LOC101465864,LOC100696456,LOC102781658,LOC102293165 other downstream 1717028 16330952 ~ 16335956 (-)
sppl2 sppl2b other upstream 422511 18480670 ~ 18494488 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other upstream 644905 18703064 ~ 18720587 (-)
G115941 NA other upstream 786746 18844905 ~ 18846277 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other upstream 873815 18931974 ~ 18935491 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other upstream 1163632 19221791 ~ 19222726 (-)

Expression


Co-expression Network