G115636 (tpm4,LOC107383605,LOC103146061,LOC102218802,LOC103479776)


Basic Information

Item Value
gene id G115636
gene name tpm4,LOC107383605,LOC103146061,LOC102218802,LOC103479776
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18060709 ~ 18065238 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU155953
TGTTCAGTTTAATTTGTGCTCAGAGTTTGGTCTACAACACAATTTCTAGCACCAAAACTGATTATCATATGGTCccaaaaccattaaaaaaaaaaataaaattaaaaaaaaaataaaagggaaaagaaacaaaaagaaccataaatatataaaagggGTACGTGTTTAGGAATAATAGTGAAATTACAGAGAATGGATGGCATGTAGAAAATcttttttttttatttgtttgatctTCATGGAATTTTACAAGCTATTGAGCTCCTGCAGTGTTTGGTCCAGGACTTGGTGCATTCCTACGTTTTGCTCTTTTTCTTTCGATAGGTTCTCTTCTAAGTCATCGATGGTCTTTTCCAGCTTAGCCACGGACCTCTCTGCGAATTCTGCACGGGTCTCCGCCTCCTTAAGTCTGTCATTCAGGACTTTAATCTCTTCCTCATACTTGTCTTCTTTCTCAGAGTACTTATCAGACTGAGCCTCTAGCGACTTGAGGTTGTTGGTGACGTTCTTCAGCTCTTCTTCCAGGTCAGCACACTTAAGTTCTGCAATTTCTGccctctcttctgctctctccaGCTCACCCTCAAGGATTACCAGTTTGCGGGCAACCTCCTCGTATTTGCGGTCTGCCTCCTCAGCGATGTGTTTGGCTTCTTTGAGTTGCATTTCCTGGATCTCCATCTTCTCCTCGTCTTTCATGGCTCTGTTCTCAATCACCTTCATGCCTCTTTCACTCTCATCTGCAGCCTTCTCAGCCTCCTCCAGTTTCTGAAGGGCTGTAGCCAGTCTCTCCTGAGCACGGTCCAACTCCTCCTCCACCAGCTGGATCCTGCGGTTCAAAGATGCCACATCGCCCTCcgcTTTGTCGCGCAGTTCCCGTTCAGTGTCCAACTCCCTTTGTACTGCCAGTGCGCGATCTTCTGCCTCATCAACATGTAGCTGGAGAGTTTGGATTTTCTTCTTTACCGTCTCCATAGTCTCGATTAGTTTGTTTTCTCCAAAAAAAGCTAAGAAGgagccccaaaaaaatctagCTAGCGGTCTAGATCGATTCGCTGTATCCTTAAAACGATAATgaggaaaacttttttttttctcaggcaGGAAGTCAGGGACGTGCGGGGTTGgaatgagaggaaaaaaaaaagggctggGAGTTTTCAGGAAATTTATGGCGAGATCGTCCAATCCTGTGAAGAAGCCTGTCTCAGATGACATCACAGGATTTAGGAGGGGAAGGCACTGCTCTTTTTCTCCACAAAAGAGGTGTGTGAT

Function

symbol description
tpm4 Predicted to enable actin filament binding activity; protein heterodimerization activity; and protein homodimerization activity. Involved in osteoblast differentiation. Located in stress fiber.

NR:

description
PREDICTED: tropomyosin alpha-4 chain isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155953 True 1275 lncRNA 0.44 9 18060709 18065238

Neighbor

gene id symbol gene type direction distance location
cib3 cib3,LOC107687907 coding upstream 8280 18048066 ~ 18052429 (+)
LOC120567609 LOC103353062,LOC104950308 coding upstream 15481 18043397 ~ 18045228 (+)
im:7138239 LOC104950317,LOC103353072 coding upstream 18980 18035952 ~ 18041729 (+)
LOC120569107 nrtn,LOC103353066 coding upstream 75169 17975976 ~ 17985540 (+)
larp6b NA coding upstream 87153 17972055 ~ 17973556 (+)
ap1m1 ap1m1,LOC107696211 coding downstream 9869 18075107 ~ 18090043 (+)
LOC120568288 klf2,LOC104966780 coding downstream 82660 18147898 ~ 18149844 (+)
LOC120568290 dnah8 coding downstream 110745 18175983 ~ 18231000 (+)
LOC120568291 NA coding downstream 192892 18258130 ~ 18264859 (+)
LOC120568293 LOC103353052,LOC101477959 coding downstream 200679 18265917 ~ 18277003 (+)
G115633 LOC102219409,LOC104931433,LOC103479775,LOC104950312,LOC105022474 non-coding upstream 2466 18052868 ~ 18058243 (+)
G115600 NA non-coding upstream 40599 18019905 ~ 18020110 (+)
G115599 ranbp3,LOC102787870 non-coding upstream 41095 18016563 ~ 18019614 (+)
G115585 NA non-coding upstream 92667 17967740 ~ 17968042 (+)
G115516 NA non-coding upstream 481120 17578910 ~ 17579589 (+)
G115660 LOC102296215,LOC102788438,LOC100704618 non-coding downstream 106441 18171679 ~ 18174071 (+)
LOC120568296 NA non-coding downstream 167379 18232617 ~ 18233706 (+)
G115690 NA non-coding downstream 168505 18233743 ~ 18234058 (+)
G115705 NA non-coding downstream 197158 18262396 ~ 18262661 (+)
G115723 NA non-coding downstream 230908 18296146 ~ 18297509 (+)
LOC120567767 NA other upstream 30814 18027280 ~ 18029895 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 577156 17406497 ~ 17483553 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 1448503 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 1533027 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 1832158 16226307 ~ 16228551 (+)
G115729 NA other downstream 239911 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 501395 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 595191 18660429 ~ 18674140 (+)
LOC120568911 NA other downstream 655127 18720365 ~ 18725447 (+)
LOC120568770 NA other downstream 951801 19017039 ~ 19052242 (+)

Expression


Co-expression Network