G115644 (ap1m1,LOC107750937)


Basic Information

Item Value
gene id G115644
gene name ap1m1,LOC107750937
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18081198 ~ 18083844 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU155965
GGACGATAAACAAACAGCAGGTGCAAATAAACTgcagcatttgttttatttaaatgtttaattcTTATTATCTCTCCAAGTTTCATCTTATTTTACCTCTACTAACTTGCTGCTGCAGGTAGGTTAAATCAATTAGTTTTGCAAACACTGCTTGACAcaggtattgtgtgtgtgcgtgtgtgcttggGATGTACCTGGATGCCTGAGGTGGTGAAGTATGGGATCTCAAACTTGACACTAATTGGTGGCTTCCCCTCCTTGTCTTCCGCCTCTACACTCGGCAGACCAAAGTGGGCTCGCATCAAATACTCCTTTCCACCAGGGAAGGACTTGATTGACCAGACGATCTCGCTGTTCTCAGGCACCCACTTTACACTGCCCACTGTGGTCTTGAATTTGGGTGAGTCAGCGTCCGTTGGCACAGGAATGTGGATCTCCACGTTGTTGGCCGTGGAACGCCTTTTGAACTGACTCTTCGCCTTGATCATGTACTCGATTCGACTGTGGGAGTGCTTCTCAATGACAGATTCAATCCAGATCAAGGGCTTcacctgaaataaaaaaatacataatttaccCACTATGAAATTCATTTTAAACAGGCTCTATTACACTTTACATACGTGTCAGTTTAAATTACATATGACACAGTCACCACCTGGTGGATTGCAAGTATAACTACAACCAGAATCAACATAAAATGTTTAAGAATAGGACATCAATTCACTGTGACAACTAATATTCATATACCCAAATTTGCATTATGTGGAATCAGTGTTGTGTGCTCTGCTTTGTAGAGAAAATCAAGGGGAAAACACAGATTGCACAAAACTTGGGGGGGGGACTTGACACTCTGTGTTGTTATGTAACATGTTTCTTAGTGTATCCACCTAAAACGTGTATACAGTTTACTGGCTTACtagatttttaaggccgatattgACATTagggagttaaaaaaaaatctgataacAATATATATTAGCTGATCATAACATAATGAGgaactaaatgttttaacataaacAATCTCGAACCCTTAAATGTGTGTCTTTTATAATTGTGACCAAGATACATACTGAGCCGGAAGATTTACAGTTTACTTTGGATGAAAAAATATGTAACTTTAATGTTGTTGTGTTGGATGTCACTACATTTTGTtgcgtacattttttttttactgtagtaGCACTGACCCATGAAATTGGGGTGGGTTTGGGGAAGGAGGAGGTATGACAGGTATGATAGAGTAATATGCAACTCtagaaagttttattttatgtatatagCCAGACAATACATGTTTAAATGTGGTAAATCACTGAATGACATGTTTCTTAGTAGCTATAACTGGAGAGACCTCTGCTCCACTGTACTACTTCCCCTCCCAAAGGGTTACTGGAAATCCTATTGTGAAACCTTTATCGAGAATTTAACGCCACTTTAAACTTGCTTAACCTGAAGTTTTTGCCTATAGCCTCCCCATTTTCTCATTACATATGATTTTCCACTTCCCTTCATGTTTTTGGTTGTAGAAATGATCTTGGCCTGGTTAATGATGCAATTTAGCCTCATTTCAGCAAAGGCTGGTTTGGCCGAGATCCCATCTCTTTAATTTTTTACAGGTTAGGAGTCTGTGTTTAAATATTCATCTAGCTTACAAACTGTGCCTTCCAAAAAAGTTGTTGTATACATCTTTGCTCAATATAATACCTCAAGAAAgttctatctatctctctaatTCAATCTCTACATTTACGGTTTTG

Function

symbol description
ap1m1 Predicted to enable clathrin adaptor activity. Acts upstream of or within brain development and digestive tract development. Predicted to be located in Golgi apparatus and clathrin-coated vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in clathrin-coated vesicle. Is expressed in several structures, including central nervous system; digestive system; eye; gonad; and heart. Orthologous to human AP1M1 (adaptor related protein complex 1 subunit mu 1).

NR:

description
PREDICTED: AP-1 complex subunit mu-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155965 True 1766 lncRNA 0.38 3 18081198 18083844

Neighbor

gene id symbol gene type direction distance location
LOC120568865 tpm4,LOC107383605,LOC102218802,LOC103146061,LOC103479776,LOC100703626,LOC102199996,LOC106537044,LOC101474423,LOC102789012,LOC106914771,LOC108232925,LOC106936184 coding downstream 10761 18060695 ~ 18070437 (-)
ranbp3b ranbp3 coding downstream 61302 17999900 ~ 18019896 (-)
cdcp2 cdcp2,LOC103375059 coding downstream 489833 17583790 ~ 17591365 (-)
tmem59 tmem59 coding downstream 501623 17575306 ~ 17579575 (-)
yipf1 yipf1 coding downstream 509810 17567352 ~ 17571388 (-)
LOC120568287 LOC103353056 coding upstream 67272 18151116 ~ 18170489 (-)
LOC120568289 LOC102296215,LOC102788438,LOC102202758,LOC101476248,LOC100704618 coding upstream 87805 18171649 ~ 18175326 (-)
LOC120568294 LOC104961359,LOC103353055,LOC100705071,LOC102788160 coding upstream 152946 18236790 ~ 18244258 (-)
LOC120569106 NA coding upstream 216568 18300412 ~ 18306617 (-)
phc3 NA coding upstream 424611 18508455 ~ 18521023 (-)
G115641 NA non-coding downstream 4139 18076540 ~ 18077059 (-)
G115640 NA non-coding downstream 4786 18075068 ~ 18076412 (-)
G115624 NA non-coding downstream 113506 17965813 ~ 17967692 (-)
G115577 NA non-coding downstream 472941 17607456 ~ 17608257 (-)
G115570 lrrc42 non-coding downstream 507073 17573463 ~ 17574125 (-)
G115691 NA non-coding upstream 149024 18232868 ~ 18234515 (-)
G115710 NA non-coding upstream 176080 18259924 ~ 18260284 (-)
LOC120568297 LOC101477959,LOC103353052,LOC102786864,LOC103479784 non-coding upstream 186490 18270334 ~ 18286055 (-)
G115722 NA non-coding upstream 211718 18295562 ~ 18295788 (-)
G115738 NA non-coding upstream 294556 18378400 ~ 18385959 (-)
LOC120568693 rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474 other downstream 23039 18052984 ~ 18058159 (-)
ly97.3 NA other downstream 972294 17039800 ~ 17108904 (-)
G115406 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 other downstream 1036136 17043126 ~ 17045062 (-)
epb41l3b epb41l3,LOC102298622,LOC106534525 other downstream 1269280 16756331 ~ 16811918 (-)
G115312 ralbp1,LOC102778314 other downstream 1441386 16637108 ~ 16639812 (-)
sppl2 sppl2b other upstream 396826 18480670 ~ 18494488 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other upstream 619220 18703064 ~ 18720587 (-)
G115941 NA other upstream 761061 18844905 ~ 18846277 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other upstream 848130 18931974 ~ 18935491 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other upstream 1137947 19221791 ~ 19222726 (-)

Expression


Co-expression Network