G115660 (LOC102296215,LOC102788438,LOC100704618)


Basic Information

Item Value
gene id G115660
gene name LOC102296215,LOC102788438,LOC100704618
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18171679 ~ 18174071 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU155984
gTATCAATAACATTCTGTCCAATAAAAATATGTGTGACCCTACTTGATGTCATGAGTCACCAGGGGCTCACCATCTGTTTTTCCAGACTTTCAGGATATAATGCAGGTTCCATCACATTACCATGAAGACATTCATGCCATTTCACTGTAGATAAACAACTTCATTGTGCACTTGGATGAAGATTAATTTGTTTGCGTCATTAATGTATGTCTACACTTCATTCAATTATTAATTTTAGAGTGTGGAAAGGAAAATAAAGTCAGTGCCACAGACCAAAATTCGTTACATTACAATCTTGACTTTTGTCTgtattttgtgattattttatgCAGTAAGTCTTAAGGTTTATGCATTATATGTTCAGTTATGTGCATTTTTTGTTTCACTGGGTTGGAAGAGGAATTTTCATCCTGGGAAGTAAAAAATCTGAAGGGCTAATTCttattctctgcaaatctctaTGTCATTTTTAATCACAGCTTCTGGTTAATGGTGCAACCTGTGCCAGAGAATCTGCAGATAAAGTAGATGTGTAGATCAAGAAAATCATCAAAACAGTGGATGTCAGTGCCTCCCTTATTACAAAATGAGGAATAGACTTGTTGGAAAACCTTAGAATCAACCCAGCAGTTCAGGGGCAACAGAGTAATATCATGACTAAAACCAAAGAGAAACTAAGTCCAATAACAAACACTTGTTAATGGACCCCCCAACATTGGGTTGTGTCCAAATCTCAGGGAAAGGATGCACAGCAGCCACAATACCCCTGGGAAATACAGGACAGAGTTTCTAAAGGAGGGACAGACAAAATCTCTGGCCACACCTCCTCAAAGCTCATCTTTAAGCTTTGCTTCCTCATCATCCATTTCTGAAAGTGCCTCCTCCATGTCATCCATTGTTTCTTCATCATCAATGTCTTCGCCATCAtcaacaccatcatcatcatcatcattatcatcatcatcaacttcGGTGTcttgttctttgttcttttcctcctcttctttccgTTTCAGGTCATCTTGCTCCTGTTTCATTTTACTCTCTGGTTCCTTGTCACACCCCATGTCTCCATTGTAATGTCTTCTGCTTCCTTGACATCGTCTGTGATGAGGAAGTTGTCAAAGATGGTACCAGATTTCACCTGCCAAAGATCAAGTCCTAAAACAGATACTTTGTCAAACTTGTAGATGTTTGAATCAGGACTGTATTCAGGATTGTCAATCTCAGGATGCACCCAGGGTCCTTTGTAGTTAGGGTTGTCGATCTGTTTGGGCTTCCATTCTCCCTTGTACTCTGGGTTTGGGATCATGGGTGGCTCCCACTCTCCATCCATATCCTCATCCCAGTCTTCAGGCTTTTTAGCGTCAGGGTCTGGAATGTTTTCAGGTTTGTCCCAGCCCTCAGGCTTGGTGTCATCAGCATCATCAATCTTGGCACGATCATCCCAGTCCTCTGGCTTCTTGGCTTCGGGGTCCTTAATTTTCTTAGGAGGCAGGAAGTCCCAGTCATCCTCCAGACTGCCAGATTCTACCTTCTCGTTATCAATCTTCACCTCATAGGTCTGATCTGGATTCAGGATTAGCGTGTACATGTGGGTCAGCTCATCATCCTAGATGAAACAGAAGTGTTTGAATTAAGCCACTGGTGCAGAGGCAACacatgtttgtttgtatattacaagaactttaaaaaaaaatttaaatgccAGAATTACCTTGCACTTAATCTCTTTCTTGATGAGGTGATTCTTGCCCTTGTAATTGAAGATGACATGGACTTTCTTGGTGCTGTAGCCACA

Function

NR:

description
PREDICTED: calreticulin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155984 True 1802 lncRNA 0.41 5 18171679 18174071

Neighbor

gene id symbol gene type direction distance location
LOC120568288 klf2,LOC104966780 coding upstream 21835 18147898 ~ 18149844 (+)
ap1m1 ap1m1,LOC107696211 coding upstream 81636 18075107 ~ 18090043 (+)
cib3 cib3,LOC107687907 coding upstream 119250 18048066 ~ 18052429 (+)
LOC120567609 LOC103353062,LOC104950308 coding upstream 126451 18043397 ~ 18045228 (+)
im:7138239 LOC104950317,LOC103353072 coding upstream 129950 18035952 ~ 18041729 (+)
LOC120568290 dnah8 coding downstream 1912 18175983 ~ 18231000 (+)
LOC120568291 NA coding downstream 84059 18258130 ~ 18264859 (+)
LOC120568293 LOC103353052,LOC101477959 coding downstream 91846 18265917 ~ 18277003 (+)
LOC120568295 nmrk2,LOC106914787,LOC103146068,LOC102216674,LOC106516864,LOC103479788,LOC107094235,LOC102787357 coding downstream 105031 18279102 ~ 18281820 (+)
loxl5b NA coding downstream 114012 18288083 ~ 18293040 (+)
G115636 tpm4,LOC107383605,LOC103146061,LOC102218802,LOC103479776 non-coding upstream 106441 18060709 ~ 18065238 (+)
G115633 LOC102219409,LOC104931433,LOC103479775,LOC104950312,LOC105022474 non-coding upstream 113436 18052868 ~ 18058243 (+)
G115600 NA non-coding upstream 151569 18019905 ~ 18020110 (+)
G115599 ranbp3,LOC102787870 non-coding upstream 152065 18016563 ~ 18019614 (+)
G115585 NA non-coding upstream 203637 17967740 ~ 17968042 (+)
LOC120568296 NA non-coding downstream 58546 18232617 ~ 18233706 (+)
G115690 NA non-coding downstream 59672 18233743 ~ 18234058 (+)
G115705 NA non-coding downstream 88325 18262396 ~ 18262661 (+)
G115723 NA non-coding downstream 122075 18296146 ~ 18297509 (+)
G115733 NA non-coding downstream 205041 18379112 ~ 18385969 (+)
LOC120567767 NA other upstream 141784 18027280 ~ 18029895 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 688126 17406497 ~ 17483553 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 1559473 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 1643997 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 1943128 16226307 ~ 16228551 (+)
G115729 NA other downstream 131078 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 392562 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 486358 18660429 ~ 18674140 (+)
LOC120568911 NA other downstream 546294 18720365 ~ 18725447 (+)
LOC120568770 NA other downstream 842968 19017039 ~ 19052242 (+)

Expression


Co-expression Network