LOC120567854


Basic Information

Item Value
gene id LOC120567854
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18458181 ~ 18465450 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU156136
TGTTCCTCCTGAGGCATCCTCACAGTGTACAAGCTATTCCCTCTCTTGCCTTTTTGCCTGGAAATAAAGTTGTCTCTTGCTTTCGGTTGGCACTGCCGCTGCATAATTACAACACCGGGAAGTGTCGGTGAGCCAGAGGCTAGCAGGAGAGCTCCTGTtgtccCAAGGAAATGGTGGAATACATAACACTGAAAACAATAAGCAGAAGTGTATATATGAACAAGgTAACCTTTCTGTTTGTGGGCTTGTGAGTCATCAAAGTGCTTTCAAACTAATAATAAAGctccaGGGAGAGTTTCTCCCCCAGCCTTACATGGCCTTCCTGCCTGCTTCCTTAGTCCAGGCATGACCGTCACCCCTAAAAAACACAGTGCTCAGCCTGGTTCCTCCTCTTACAACGACACAAGTCCCAGGTGTTGCACTTGGCATTGAATAGGTAAGATCAACCATCCAAGTCTGATGGTATGTGtcc
>TU156137
TGTTCCTCCTGAGGCATCCTCACAGTGTACAAGCTATTCCCTCTCTTGCCTTTTTGCCTGGAAATAAAGTTGTCTCTTGCTTTCGGTTGGCACTGCCGCTGCATAATTACAACACCGGGAAGTGTCGGTGAGCCAGAGGCTAGCAGGAGAGCTCCTGTtgtccCAAGGAAATGGTGGAATACATAACACTGAAAACAATAAGCAGAAGTGTATATATGAACAAGgTAACCTTTCTGTTTGTGGGCTTGTGAGTCATCAAAGTGCTTTCAAACTAATAATAAAGctccaGGGAGAGTTTCTCCCCCAGCCTTACATGGCCTTCCTGCCTGCTTCCTTAGTCCAGGCATGACCGTCACCCCTAAAAAACACAGTGCTCAGCCTGGTTCCTCCTCTTACAACGACACAAGTCCCAGGTTGGTgagcatgtatttatttattttttttaaacgctatttCCATCCTATACATTTGTGTCTTCGACCACAACCGATAGTGTCCTAATTTATACATACGTGACACAGATTGTATTTCAGCTGCTGACTCTTGACTGGAAAACAAATGTTCATGTTTTTCCAggttaatttcattcatgtaaaaaaaaaaaaacctgattcTGAGTCATGGgatgtcttttgtttttttactggcATTTCTCCTTTTGACATCAAGGTGTTGCACTTGGCATTGAATAGGTAAGATCAACCATCCAAGTCTGATGGTATGTGtccgttttgttgtttttttgtgtgcatgtttgtgcgcCGACTTTTACCTGTTTAGCTTTATCTTATCA
>XR_005640622.1
GggatttcttttaaaaacacccCCTCCAGCTCAGCTCCATTATTTCTTATTTGTGCACTTGTTCCTCCTGAGGCATCCTCACAGTGTACAAGCTATTCCCTCTCTTGCCTTTTTGCCTGGAAATAAAGTTGTCTCTTGCTTTCGGTTGGCACTGCCGCTGCATAATTACAACACCGGGAAGTGTCGGTGAGCCAGAGGCTAGCAGGAGAGCTCCTGTtgtccCAAGGAAATGGTGGAATACATAACACTGAAAACAATAAGCAGAAGTGTATATATGAACAAGgTAACCTTTCTGTTTGTGGGCTTGTGAGTCATCAAAGTGCTTTCAAACTAATAATAAAGctccaGGGAGAGTTTCTCCCCCAGCCTTACATGGCCTTCCTGCCTGCTTCCTTAGTCCAGGCATGACCGTCACCCCTAAAAAACACAGTGCTCAGCCTGGTTCCTCCTCTTACAACGACACAAGTCCCAGGTGTTGCACTTGGCATTGAATAGGTAAGATCAACCATCCAAGTCTGATGGTATGTGtccgttttgttgtttttttgtgtgcatgtttgtgcgcCGACTTTTACCTGTTTAGCTTTATCTTATCACATATGAACTAGATCTCATATGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156136 False 472 lncRNA 0.47 6 18458240 18465361
TU156137 True 793 lncRNA 0.42 5 18458240 18465426
XR_005640622.1 False 620 lncRNA 0.45 6 18458181 18465450

Neighbor

gene id symbol gene type direction distance location
insra insr coding upstream 4216 18394984 ~ 18453965 (+)
mfsd14a2 mfsd14a,LOC103353046,LOC100705862,LOC102785602 coding upstream 73210 18360882 ~ 18384971 (+)
myo9b NA coding upstream 97951 18328258 ~ 18360230 (+)
loxl5b NA coding upstream 165141 18288083 ~ 18293040 (+)
LOC120568295 nmrk2,LOC106914787,LOC103146068,LOC102216674,LOC106516864,LOC103479788,LOC107094235,LOC102787357 coding upstream 176361 18279102 ~ 18281820 (+)
arhgef18a NA coding downstream 600 18466050 ~ 18479721 (+)
dapk3 dapk3,LOC102784251 coding downstream 31241 18496691 ~ 18505667 (+)
prkci prkci coding downstream 56519 18521969 ~ 18556360 (+)
nadkb LOC103353035,LOC102782138,LOC101483211,LOC102289018 coding downstream 143763 18609213 ~ 18625177 (+)
LOC120568684 NA coding downstream 215150 18680600 ~ 18682419 (+)
G115781 NA non-coding upstream 2561 18454033 ~ 18455620 (+)
G115733 NA non-coding upstream 72212 18379112 ~ 18385969 (+)
G115723 NA non-coding upstream 160672 18296146 ~ 18297509 (+)
G115705 NA non-coding upstream 195520 18262396 ~ 18262661 (+)
G115690 NA non-coding upstream 224123 18233743 ~ 18234058 (+)
G115793 NA non-coding downstream 23081 18488531 ~ 18490186 (+)
G115826 sec62 non-coding downstream 167266 18632716 ~ 18646383 (+)
G115856 samd7 non-coding downstream 183324 18648774 ~ 18649804 (+)
G115862 NA non-coding downstream 218264 18683714 ~ 18684465 (+)
LOC120568663 NA non-coding downstream 224184 18689634 ~ 18692121 (+)
G115729 NA other upstream 103837 18305149 ~ 18354344 (+)
LOC120567767 NA other upstream 428286 18027280 ~ 18029895 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 974628 17406497 ~ 17483553 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 1845975 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 1930499 16439025 ~ 16527682 (+)
skila skil,LOC102782637 other downstream 101183 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 194979 18660429 ~ 18674140 (+)
LOC120568911 NA other downstream 254915 18720365 ~ 18725447 (+)
LOC120568770 NA other downstream 551589 19017039 ~ 19052242 (+)
emilin2a NA other downstream 981561 19447011 ~ 19465381 (+)

Expression


Co-expression Network