G115826 (sec62)


Basic Information

Item Value
gene id G115826
gene name sec62
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18632716 ~ 18646383 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU156191
GAAAAAAGCTGGGAACTACTGCTAAAAACTAAAATTCCTATGCAAATTAAAAATGGCTAGGGcgacatttatatttaaaatgttttgagatatatatctatatctatcaagtaaatgtacttaccaACAGCAAGAAGCAATATACTGGCTACAAAGCAGCCTGCCGCAACACTTAGATAGTAAACTCCTACACGCATTTCTGCTGGCCACAGGGGGAACAGTGTGGCTGCTATCACAGCAATGACGAGTATCAGTCCCATGGCAAATGTCTTAAAATGAACAGGATCGTAAATCCACACATACAcCTCATTTCCATCTAGAAACAGCTGATCCTCATGAGGCTCCAGTTTAAACTTCTTCTtcacctctttcttcttcttgggGGTTCCAGGACTGTCATCGTTCTTCTCTTTCTTGGTTTCAACAGCCTCAgactctttcttcttctctttctccttcttcccttttctctcctcctctttgctGCTGTCCCCCTTGGTCTTCTCTTTATCCTtatctttctccttctctttctctttctccttctctttcttggTGTCTTTCTCAGGCTTTTTCTTCATCACTTTGAGAGCCCGGTGGAAGAATTGCTTCTTTAGGAGTCTGTTGCAGTAATCCAACACAGACTCCCTGGTGGTGAACAGCGCCTCCTCTCCCTTCTTGGCCTTGGCCCACTTGGAGTCCATCAGACAGTCCACTGCCTTGGAGGCAATAAAATAGTCGACTCTGTGGCCCATCATGTTGGTGGACTTGGTTGGGCAGTTGAATCGGAGGTACTTGGCCACCGCCTTCTCCTCCTTGGTGGGCTCGCTCACCTCCTGGATCCGTTTCTTGTGCCTCCTGCGCTCCGCCATGATCCCCC

Function

symbol description
sec62 Predicted to be involved in posttranslational protein targeting to membrane, translocation. Predicted to act upstream of or within protein transport. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum and membrane. Orthologous to human SEC62 (SEC62 homolog, preprotein translocation factor).

NR:

description
DNA repair and recombination protein RAD54B-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156191 True 880 lncRNA 0.46 7 18632716 18646383

Neighbor

gene id symbol gene type direction distance location
nadkb LOC103353035,LOC102782138,LOC101483211,LOC102289018 coding upstream 7539 18609213 ~ 18625177 (+)
prkci prkci coding upstream 76356 18521969 ~ 18556360 (+)
dapk3 dapk3,LOC102784251 coding upstream 127049 18496691 ~ 18505667 (+)
arhgef18a NA coding upstream 152995 18466050 ~ 18479721 (+)
insra insr coding upstream 178751 18394984 ~ 18453965 (+)
LOC120568684 NA coding downstream 34217 18680600 ~ 18682419 (+)
LOC120568690 NA coding downstream 53099 18699482 ~ 18701227 (+)
apoda.1 LOC103353029,LOC104955147,LOC101484702,LOC102313692,LOC102209340 coding downstream 69975 18716358 ~ 18718511 (+)
and2 LOC103353068 coding downstream 84345 18730728 ~ 18737190 (+)
LOC120568945 LOC101485289,LOC100699127 coding downstream 109823 18756206 ~ 18799833 (+)
G115793 NA non-coding upstream 142530 18488531 ~ 18490186 (+)
LOC120567854 NA non-coding upstream 167266 18458181 ~ 18465450 (+)
G115781 NA non-coding upstream 177096 18454033 ~ 18455620 (+)
G115733 NA non-coding upstream 246747 18379112 ~ 18385969 (+)
G115723 NA non-coding upstream 335207 18296146 ~ 18297509 (+)
G115856 samd7 non-coding downstream 2391 18648774 ~ 18649804 (+)
G115862 NA non-coding downstream 37331 18683714 ~ 18684465 (+)
LOC120568663 NA non-coding downstream 43251 18689634 ~ 18692121 (+)
G115863 NA non-coding downstream 46622 18693005 ~ 18694301 (+)
G115864 NA non-coding downstream 48008 18694391 ~ 18694646 (+)
skila skil,LOC102782637 other upstream 30453 18566633 ~ 18602263 (+)
G115729 NA other upstream 278372 18305149 ~ 18354344 (+)
LOC120567767 NA other upstream 602821 18027280 ~ 18029895 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 1149163 17406497 ~ 17483553 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 2020510 16610376 ~ 16612206 (+)
LOC120568691 NA other downstream 14046 18660429 ~ 18674140 (+)
LOC120568911 NA other downstream 73982 18720365 ~ 18725447 (+)
LOC120568770 NA other downstream 370656 19017039 ~ 19052242 (+)
emilin2a NA other downstream 800628 19447011 ~ 19465381 (+)
LOC120567833 gbg5 other downstream 1726844 20373227 ~ 20375633 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G34611 NA non-coding CI01000004 null 15286323 ~ 15292665 (-)