G115856 (samd7)


Basic Information

Item Value
gene id G115856
gene name samd7
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18648774 ~ 18649804 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU156224
ACCAGGTGGAAGGAAACCATTTCCAGGGACTGGGAACATGTAAGGCATGCCTGTGAGCGCTCCACCAGCAGAGGGATACATGAATTTCTCCTGAAAAGCTGAACATTGACTGGATATGTCTTTATCATTTGCACTGCTGTTGGCCACATCTGACCCATCTTGACTGTTCACACAGGCTTTACGCAGGCCTGGGTCCCCATCTTTGTAGTTCTTCCGGCTTCCTGTGGCAAGGTCAGAGTCTATTTTTGCTTGATGGTGCGTCTTGCTAGTGGGACACTCCTCTCCCATGTCCCCCTTAGCCTCCACCTCTTTCTCTTCCCCTGATGTGGCTCCTGGGCTCTGCTCTACACTTTTATCTTCAGTATGGCCCTTCAGGTTGGACACATGACTCTCTGCGCTCTTGTGAGCGGTCGGTCTCCTACCAGCCCTGCGTCCCCTCTCTCTGTGCAGCGTACTGATTGATGGGTAAGGGCTGGCTGACATGAGGATGCTGTTGGAGTGTAGTTCATCCAAGGTGGGACGGTGGACGAAGACATCTTGGCCGTCTGGCATGCGTTGACGACCTCTAAATGCCATGGGGTTGGATGGGTACGACATGTGATTATCAATTCCCATAAGTCCCTTCTGTTGGGCATTCTCCATCTCCTTCTGGTGCAGGATGGCATTCATCTCCATTCTGGCTATATTTTGCTTGTGAATGTACTCCTGTCGCCGGGCAACTGTTTCCATGGGCTCCGAAGGCAAGAAGCCGTAGCCagctgagaaaaagaaaaagaaagacttGCTGTTAACGCTCATATAGACAGGCCGTTAGGTATGAATGTGCATCGGGCCATGCTCACCTGCTCC

Function

symbol description
samd7 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD7 (sterile alpha motif domain containing 7).

NR:

description
PREDICTED: sterile alpha motif domain-containing protein 7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156224 True 849 lncRNA 0.52 2 18648774 18649804

Neighbor

gene id symbol gene type direction distance location
nadkb LOC103353035,LOC102782138,LOC101483211,LOC102289018 coding upstream 23597 18609213 ~ 18625177 (+)
prkci prkci coding upstream 92414 18521969 ~ 18556360 (+)
dapk3 dapk3,LOC102784251 coding upstream 143107 18496691 ~ 18505667 (+)
arhgef18a NA coding upstream 169053 18466050 ~ 18479721 (+)
insra insr coding upstream 194809 18394984 ~ 18453965 (+)
LOC120568684 NA coding downstream 30796 18680600 ~ 18682419 (+)
LOC120568690 NA coding downstream 49678 18699482 ~ 18701227 (+)
apoda.1 LOC103353029,LOC104955147,LOC101484702,LOC102313692,LOC102209340 coding downstream 66554 18716358 ~ 18718511 (+)
and2 LOC103353068 coding downstream 80924 18730728 ~ 18737190 (+)
LOC120568945 LOC101485289,LOC100699127 coding downstream 106402 18756206 ~ 18799833 (+)
G115826 sec62 non-coding upstream 2391 18632716 ~ 18646383 (+)
G115793 NA non-coding upstream 158588 18488531 ~ 18490186 (+)
LOC120567854 NA non-coding upstream 183324 18458181 ~ 18465450 (+)
G115781 NA non-coding upstream 193154 18454033 ~ 18455620 (+)
G115733 NA non-coding upstream 262805 18379112 ~ 18385969 (+)
G115862 NA non-coding downstream 33910 18683714 ~ 18684465 (+)
LOC120568663 NA non-coding downstream 39830 18689634 ~ 18692121 (+)
G115863 NA non-coding downstream 43201 18693005 ~ 18694301 (+)
G115864 NA non-coding downstream 44587 18694391 ~ 18694646 (+)
G115889 NA non-coding downstream 183739 18833543 ~ 18833742 (+)
skila skil,LOC102782637 other upstream 46511 18566633 ~ 18602263 (+)
G115729 NA other upstream 294430 18305149 ~ 18354344 (+)
LOC120567767 NA other upstream 618879 18027280 ~ 18029895 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 1165221 17406497 ~ 17483553 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 2036568 16610376 ~ 16612206 (+)
LOC120568691 NA other downstream 10625 18660429 ~ 18674140 (+)
LOC120568911 NA other downstream 70561 18720365 ~ 18725447 (+)
LOC120568770 NA other downstream 367235 19017039 ~ 19052242 (+)
emilin2a NA other downstream 797207 19447011 ~ 19465381 (+)
LOC120567833 gbg5 other downstream 1723423 20373227 ~ 20375633 (+)

Expression


Co-expression Network