LOC120568911


Basic Information

Item Value
gene id LOC120568911
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18720365 ~ 18725447 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU156255
ATTTTCACCCGGCACCGCTCTAGCTTGGCTGTGTAGCTCGCTTTATTATACATATATGGTGTACCTTCTTTAGCTAATAATTTGATGTATTTTTGGCGATAAGACCTCGTGGTTTTGTTCATCGATGCCACTAAAGGATCAATCAAATTCGACCGTCGCCATGAAACCAGCAGTGGATGAGATGTTTCCTGAGGGCGCGGGACCGTACGTTGATCTGGATGAGGCTGGGGGAAGCACAGGACTGCTGATGGACCTGGCTGCCAATGAAAAGGCAGTTCACTGCGACTTCTTCAATGatTTTGAGGATCtgtttgatgatgatgacatcCAGTAACAGAGACTAACACGTCTTCAGAGTAATGATGGATGATATTCACACCACTCCACTTTTTTTTGGGTGGAAAGGAAACCAACCATTTACTGTCTAATGACATACAATTGCCTTTCATAGATGTCCTAGTTTCAGGCTTTTTTAAAACATCCTTCAAAAGTCGTGACCCGCTCCAGATGTTGTGAAATTCTTAACATCCCAAGGATTCCTTCATATATGGTATGTTAAAATTATGAGCTTGTATTGTGCTCATGTCTTCGACTGCTGCGGGATTGCAGGTTTCAGTGTGTTGGAGAACACCTGTTCAGAGCGTAATTATACATGTGATGGGCAGAGGCTCCATATGCTGTCGCCCTTAAACATGCTGCAGATGGCATATGATGAATGATGGTCTGCTAAAATGACTTAAATTATTTGTGTAACGTGcatgatagtcacatacagtacattctgTGTGTTTGGGTTTATAGCTGCAGTCCTGTTCCATCATTCATTTGCACCCGTGTACAGTAGTTATGCATCCACACTTGTATTTTTGTGgtcaaaaatcaataaat
>XM_039816658.1
TTTCACCCGGCACCGCTCTAGCTTGGCTGTGTAGCTCGCTTTATTATACATATATGGTGTACCTTCTTTAGCTAATAATTTGATGTATTTTTGGCGATAAGACCTCGTGGTTTTGTTCATCGATGCCACTAAAGGATCAATCAAATTCGACCGTCGCCATGAAACCAGCAGTGGATGAGATGTTTCCTGAGGGCGCGGGACCGTACGTTGATCTGGATGAGGCTGGGGGAAGCACAGGACTGCTGATGGACCTGGCTGCCAATGAAAAGGCAGTTCACTGCGACTTCTTCAATGatTTTGAGGATCtgtttgatgatgatgacatcCAGTAACAGAGACTAACACGTCTTCAGAGTAATGATGGATGATATTCACACCACTCCACTTTTTTTTGGGTGGAAAGGAAACCAACCATTTACTGTCTAATGACATACAATTGCCTTTCATAGATGTCCTAGTTTCAGGCTTTTTTAAAACATCCTTCAAAAGTCGTGACCCGCTCCAGATGTTGTGAAATTCTTAACATCCCAAGGATTCCTTCATATATGGTATGTTAAAATTATGAGCTTGTATTGTGCTCATGTCTTCGACTGCTGCGGGATTGCAGGTTTCAGTGTGTTGGAGAACACCTGTTCAGAGCGTAATTATACATGTGATGGGCAGAGGCTCCATATGCTGTCGCCCTTAAACATGCTGCAGATGGCATATGATGAATGATGGTCTGCTAAAATGACTTAAATTATTTGTGTAACGTGcatgatagtcacatacagtacattctgTGTGTTTGGGTTTATAGCTGCAGTCCTGTTCCATCATTCATTTGCACCCGTGTACAGTAGTTATGCATCCACACTTGTATTTTTGTGgtcaaaaatcaataaatagcATTTTGTATAAAAGAA

Function

GO:

id name namespace
GO:0090575 RNA polymerase II transcription regulator complex cellular_component
GO:0000439 transcription factor TFIIH core complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005667 transcription regulator complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156255 False 888 lncRNA 0.42 3 18720365 18725428
XM_039816658.1 True 905 mRNA 0.42 3 18720367 18725447

Neighbor

gene id symbol gene type direction distance location
apoda.1 LOC103353029,LOC104955147,LOC101484702,LOC102313692,LOC102209340 coding upstream 1854 18716358 ~ 18718511 (+)
LOC120568690 NA coding upstream 19138 18699482 ~ 18701227 (+)
LOC120568684 NA coding upstream 37946 18680600 ~ 18682419 (+)
nadkb LOC103353035,LOC102782138,LOC101483211,LOC102289018 coding upstream 95188 18609213 ~ 18625177 (+)
prkci prkci coding upstream 164005 18521969 ~ 18556360 (+)
and2 LOC103353068 coding downstream 5281 18730728 ~ 18737190 (+)
LOC120568945 LOC101485289,LOC100699127 coding downstream 30759 18756206 ~ 18799833 (+)
lrrcc1 lrrcc1 coding downstream 78204 18803651 ~ 18820386 (+)
e2f5 LOC100699665,LOC102779743 coding downstream 95649 18821096 ~ 18833039 (+)
si:ch211-106h4.9 LOC103360860 coding downstream 142635 18868082 ~ 18920043 (+)
G115864 NA non-coding upstream 25719 18694391 ~ 18694646 (+)
G115863 NA non-coding upstream 26064 18693005 ~ 18694301 (+)
LOC120568663 NA non-coding upstream 28244 18689634 ~ 18692121 (+)
G115862 NA non-coding upstream 35900 18683714 ~ 18684465 (+)
G115856 samd7 non-coding upstream 70561 18648774 ~ 18649804 (+)
G115889 NA non-coding downstream 108096 18833543 ~ 18833742 (+)
G115921 NA non-coding downstream 117125 18842572 ~ 18842794 (+)
G115923 NA non-coding downstream 139679 18865126 ~ 18866134 (+)
G115931 NA non-coding downstream 197306 18922753 ~ 18923170 (+)
G115934 NA non-coding downstream 206479 18931926 ~ 18933912 (+)
LOC120568691 NA other upstream 46225 18660429 ~ 18674140 (+)
skila skil,LOC102782637 other upstream 118102 18566633 ~ 18602263 (+)
G115729 NA other upstream 366021 18305149 ~ 18354344 (+)
LOC120567767 NA other upstream 690470 18027280 ~ 18029895 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 1236812 17406497 ~ 17483553 (+)
LOC120568770 NA other downstream 291592 19017039 ~ 19052242 (+)
emilin2a NA other downstream 721564 19447011 ~ 19465381 (+)
LOC120567833 gbg5 other downstream 1647780 20373227 ~ 20375633 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other downstream 2157170 20882617 ~ 20915322 (+)
LOC120568354 NA other downstream 3145506 21870953 ~ 21897391 (+)

Expression


Co-expression Network