G116128 (atp6v1h)


Basic Information

Item Value
gene id G116128
gene name atp6v1h
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19554787 ~ 19568018 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU156563
CGTTTGCCACGTGGGTAATGCCGCACATACTCTCCGATGTCGTGAGCTGCCACTGCTATGACTTGAGGATCATCAGACACTTCCAAAAGCCTTGTCAAGATCTTGAGGAGCTCGTAGTTCTTTTCGTTCAGGCGGACGGCGTTCTCACGCCAGAACTTCTCAGACTTGTGCACAGGACTCCATTCCAGGCGGCCAGACTTAAGTTCAGAGCTGTACTCATCAAATGAGCTGAGATCCTGTACGCTCTCTCCCAGCATCTCCAGCAGGAATTTAATGTCCTCGGTGATGTCCTCGTCGTCATATTTCTGCTGCTCGAGGTTCTCGAGTTGCTTTAGCACCTTGCACTGAATCATGGCCAGGGCGTACTCCTGACGAGTCTCCTTCTCTGCTGACTTCTCCAGAAGATTCCTGAAGGCAGCCAGAATGATTCGAGTGACCTTCTCCTTGACAGACTCCTGAAGGATGTCCGACAGGGCTGGCACTACGTTGTAGCGTCTCAACTGCTCACAGAGCTGAGGACTGAAGGCCAGGAGCCAAACACAGAAGATCATCTGGTACTGGAGCTGGAAGCCACACTTGTTGCTCAGCACTGCTGTGATGCAGTTGACTCCATCAGCCTCCACCCAGGCAAACCTATACTCATTCACCCTCAGCATCAGCTGCAGGCACCCAGCCACACACTGGACGTACTGAGAGCTCTGTGAACTGAGTTGGCTTTTGATCCAGTTGAAGTAGTAGTTCAGATCACTTCCC

Function

symbol description
atp6v1h Predicted to enable proton-transporting ATPase activity, rotational mechanism. Involved in eye pigmentation and positive regulation of neural retina development. Acts upstream of or within animal organ development and pigmentation. Predicted to be part of vacuolar proton-transporting V-type ATPase, V1 domain. Is expressed in several structures, including digestive system; gonad; integument; nervous system; and trigeminal placode. Used to study osteoporosis. Orthologous to human ATP6V1H (ATPase H+ transporting V1 subunit H).

NR:

description
PREDICTED: V-type proton ATPase subunit H isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156563 True 753 lncRNA 0.52 6 19554787 19568018

Neighbor

gene id symbol gene type direction distance location
trnar-ucu_13 NA coding upstream 37842 19516853 ~ 19516945 (+)
myl12.2 LOC107098295,LOC102237517,LOC103361564,LOC101069867,LOC103135689,LOC103479826 coding upstream 41325 19510386 ~ 19513462 (+)
adcyap1b prp/pacap,LOC104943411,LOC108232947,LOC103135685 coding upstream 288517 19260195 ~ 19266270 (+)
clul1 LOC103361571 coding upstream 328224 19220205 ~ 19226563 (+)
LOC120568752 NA coding upstream 450346 19067450 ~ 19104441 (+)
rgs20 rgs20,LOC103361426,LOC100710193,LOC102795665,LOC101473767,LOC107098286,LOC104917737 coding downstream 11099 19579117 ~ 19592564 (+)
LOC120568599 LOC107383795 coding downstream 35626 19603644 ~ 19615854 (+)
LOC120568742 vim coding downstream 71490 19639508 ~ 19646524 (+)
pde1cb pde1c,LOC108232872,LOC103135697,LOC103479836,LOC102794047,LOC100712431,LOC103361422 coding downstream 80401 19648419 ~ 19751633 (+)
neurod6b neurod6,LOC102793566,LOC102311402,LOC101472195 coding downstream 201271 19769289 ~ 19772164 (+)
G116117 NA non-coding upstream 38162 19515535 ~ 19516625 (+)
G116115 NA non-coding upstream 46646 19507899 ~ 19508141 (+)
G116114 LOC104962928 non-coding upstream 50954 19503129 ~ 19503833 (+)
G116113 NA non-coding upstream 53489 19500420 ~ 19501298 (+)
G116112 NA non-coding upstream 54712 19499876 ~ 19500075 (+)
LOC120568776 NA non-coding downstream 51211 19619229 ~ 19624184 (+)
G116168 NA non-coding downstream 59236 19627254 ~ 19627619 (+)
G116174 NA non-coding downstream 69860 19637878 ~ 19638123 (+)
G116175 NA non-coding downstream 70152 19638170 ~ 19638412 (+)
G116200 NA non-coding downstream 184475 19752493 ~ 19754448 (+)
emilin2a NA other upstream 89406 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 502545 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 829340 18720365 ~ 18725447 (+)
LOC120568691 NA other upstream 880647 18660429 ~ 18674140 (+)
skila skil,LOC102782637 other upstream 952524 18566633 ~ 18602263 (+)
LOC120567833 gbg5 other downstream 805209 20373227 ~ 20375633 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other downstream 1314599 20882617 ~ 20915322 (+)
LOC120568354 NA other downstream 2302935 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 3040031 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 3073492 22641510 ~ 22681293 (+)

Expression


Co-expression Network